Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D21
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819...    69   6e-12
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484...    43   4e-04
03_02_0694 - 10448712-10448996,10449030-10449074,10449588-104496...    37   0.024
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805...    29   6.3  
01_07_0120 + 41185884-41186127,41187228-41187310,41188596-411886...    29   6.3  

>07_03_1339 +
           25879246-25881154,25881502-25881696,25881777-25881928,
           25882147-25882607,25883723-25883810,25884066-25884135,
           25884288-25884361,25884456-25884524,25884647-25884724,
           25884946-25885070,25885168-25885240,25885508-25885566,
           25885650-25886027,25886134-25886236,25886332-25886544
          Length = 1348

 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 31/82 (37%), Positives = 51/82 (62%)
 Frame = +2

Query: 50  PPRHKQSNILFITNLVRPFTLLQLKNLLQRTGRIEENGFWIDKIKSKCYVKYETEDQAVE 229
           PP+   +  L I   VRPFTL  ++ LL +TG +    FW+D IK+ CYV + + ++A+ 
Sbjct: 704 PPQKPATTSLRIDRFVRPFTLKAVQELLGKTGSV--CSFWMDPIKTHCYVTFSSVEEALA 761

Query: 230 TRHALHGVTWPVSNPKTLHVDF 295
           TR+A++ + WP +N  +L  +F
Sbjct: 762 TRNAVYNLQWPPNNGSSLVAEF 783


>03_03_0168 -
           15047383-15047847,15048085-15048192,15048313-15048464,
           15048555-15048752,15049553-15050856,15051281-15051354,
           15051458-15051492,15052853-15053015
          Length = 832

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +2

Query: 50  PPRHKQSNI-LFITNLVRPFTLLQLKNLLQRTGRIEENGFWIDKIKSKCYV 199
           PP  K +   L I   VRPFTL  ++ LL +TG +    FW+D IK+ CYV
Sbjct: 593 PPSQKPATASLRIDRFVRPFTLKAVQELLGKTGSL--CSFWMDHIKTHCYV 641


>03_02_0694 -
           10448712-10448996,10449030-10449074,10449588-10449647,
           10449817-10449890,10451056-10451149,10451851-10452023,
           10452526-10452598
          Length = 267

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 26/81 (32%), Positives = 38/81 (46%)
 Frame = +2

Query: 41  PPSPPRHKQSNILFITNLVRPFTLLQLKNLLQRTGRIEENGFWIDKIKSKCYVKYETEDQ 220
           PP+PP    +NILFI NL    T + L+ L Q+     E    I+      +V+YE + Q
Sbjct: 187 PPAPP----NNILFIQNLPAETTSMMLQILFQQYPGFREVRM-IEAKPGIAFVEYEDDSQ 241

Query: 221 AVETRHALHGVTWPVSNPKTL 283
           ++    AL G      NP  +
Sbjct: 242 SMVAMQALQGFKITPYNPMAI 262


>06_01_1032 +
           8055678-8055782,8055875-8055936,8057302-8057507,
           8057595-8058314,8058404-8058603,8058988-8059172,
           8059287-8059354,8059432-8060246,8060502-8060599,
           8060702-8060887,8061358-8061538,8061651-8061812,
           8061894-8061937,8062059-8062115,8062409-8062505,
           8062614-8062786,8062868-8063081,8063270-8063395,
           8064072-8064188,8064459-8064566,8064729-8064898,
           8065049-8065127,8065211-8065285,8065845-8065942,
           8066030-8066137,8066238-8066295,8066527-8066631,
           8067461-8069516,8069804-8070697,8070896-8071852,
           8072022-8072075,8072157-8072222,8072294-8073472,
           8073868-8075598,8075764-8075829,8076763-8077788,
           8077893-8078041
          Length = 4264

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +3

Query: 30  NLQDRPVHQGTNSQIYS---LSPI*SGHLHYCNSKT 128
           N+Q     QGT+S+++S   +SP+ SG LHY    T
Sbjct: 593 NIQQTVPIQGTDSEMHSQETISPMPSGQLHYFQGDT 628


>01_07_0120 +
           41185884-41186127,41187228-41187310,41188596-41188647,
           41188729-41188854,41188967-41189049,41189308-41189490,
           41189901-41190237,41190607-41190750,41190854-41190939,
           41191069-41191113
          Length = 460

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +2

Query: 77  LFITNLVRPFTLLQLKNLLQRTGRIEENGFWIDK---IKSKC-YVKYETEDQAVETRHAL 244
           LFI  L +  T  +L +L  + G I++           K+ C ++KYET++QAV    AL
Sbjct: 130 LFIGMLPKNVTDTELTDLFSKYGNIKDLQILRGSQQTSKAGCAFLKYETKEQAVAAIEAL 189

Query: 245 HG 250
           +G
Sbjct: 190 NG 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,208,422
Number of Sequences: 37544
Number of extensions: 382601
Number of successful extensions: 912
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)