Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D21
         (860 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                    113   2e-25
SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)                    30   2.1  
SB_27377| Best HMM Match : Neur_chan_memb (HMM E-Value=1.6e-22)        29   6.4  
SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092)                    28   8.5  

>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score =  113 bits (271), Expect = 2e-25
 Identities = 51/85 (60%), Positives = 64/85 (75%)
 Frame = +2

Query: 44   PSPPRHKQSNILFITNLVRPFTLLQLKNLLQRTGRIEENGFWIDKIKSKCYVKYETEDQA 223
            PSP R+ +S  + + NLVRPFTL QLK LL ++G +EE+GFWID+IKS CYV Y T + A
Sbjct: 815  PSPARNPESTNIHVQNLVRPFTLRQLKELLGKSGTLEEDGFWIDRIKSHCYVVYTTVEGA 874

Query: 224  VETRHALHGVTWPVSNPKTLHVDFS 298
            V TR ALHGV WP ++PK L VDF+
Sbjct: 875  VATRAALHGVKWPPTSPKILSVDFA 899



 Score = 36.3 bits (80), Expect = 0.032
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +1

Query: 628  KNKTTPCIYWLPLSAETIAI----KEEQRXXXMAE 720
            K KTTPC+YWLPL+ E        KE++R    AE
Sbjct: 959  KTKTTPCLYWLPLTTEQAEARFREKEDRRIQRQAE 993


>SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)
          Length = 1354

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 440  YAPMTFPLLPLFSDLAPEANPQLFLELPKVEHSLLPH 330
            + P T PL   F+ L P+AN    L  P+ +H +LPH
Sbjct: 1193 HIPQTRPLH--FTPLTPDANTAHHLTYPRRDHCVLPH 1227


>SB_27377| Best HMM Match : Neur_chan_memb (HMM E-Value=1.6e-22)
          Length = 200

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -2

Query: 550 FWGPMSSFLRWTLFTSQLVSLFVFIIFAYIPLPHSSFTLP*LFHFCLSFQILL 392
           FW P  S  R    T+ L+++ VF++     +P SS ++P L  F ++  +++
Sbjct: 27  FWIPSESGERIGFVTTLLLAMMVFLLVVPDLIPESSTSIPILGVFLMATLVMV 79


>SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 371 TVEDWLREQDLKREAEVEKSWERKGTMREWDVGKN 475
           TV DW+R+QD        + W R+G  R    GKN
Sbjct: 201 TVRDWVRKQDAFLHQPAPEVW-REGLRRGGSSGKN 234


>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +2

Query: 68  SNILFITNLVRPFTLLQLKNLLQRTGRIEENGFWIDKIKSKCYVKYETEDQAVETRHALH 247
           +NILF+TNL    T L L  L  +    +E    +       +V++E E QA   + AL 
Sbjct: 166 NNILFLTNLPMETTELMLSMLFNQFPGFKEVRL-VPGRSDISFVEFENEVQAGTAKDALQ 224

Query: 248 G 250
           G
Sbjct: 225 G 225


>SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 417 KWKSHGSVKEL*GSGM*AKMIKTKRETSCDV 509
           KW  +G      G G+ A   KT R+T CDV
Sbjct: 483 KWSGYGPCSSDCGQGVCAFGSKTSRQTQCDV 513


>SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092)
          Length = 1270

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 374 LFLELPKVEHSLLPHWIMLCQMLLLLKSPH--VKSLDLIQAMSPHAR 240
           L +   ++ H +LPH+  LC M  + +  H  +++ D +   SP  R
Sbjct: 637 LLIHTCRILHRILPHYTPLCGMFFIGRFKHLLIENADYVSFGSPKIR 683


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,018,223
Number of Sequences: 59808
Number of extensions: 424234
Number of successful extensions: 982
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)