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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D21
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-19|AAB37630.2|  580|Caenorhabditis elegans Conserved olig...    66   2e-11
U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic glut...    34   0.11 
L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate recep...    34   0.11 
Z72517-3|CAA96695.1|  717|Caenorhabditis elegans Hypothetical pr...    31   0.80 
AF067609-1|ABB51195.1|  394|Caenorhabditis elegans Hypothetical ...    30   1.8  
U55857-7|AAA98033.1|  217|Caenorhabditis elegans Rnp (rrm rna bi...    30   2.4  
Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    28   9.8  
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    28   9.8  
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    28   9.8  

>U80437-19|AAB37630.2|  580|Caenorhabditis elegans Conserved
           oligomeric golgi (cog)component protein 5 protein.
          Length = 580

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
 Frame = +2

Query: 38  RPPSPP-RHKQSNILFITNLVRPFTLLQLKNLLQRT-GRIEENGFWIDKIKSKCYVKYET 211
           R  SP  RH  SN++ I  L RPFT  QL+  +Q+  G I +   W+DK+KS C+VK  +
Sbjct: 282 RVSSPSSRHPVSNVVHIRGLTRPFTEGQLRAEIQKNCGEIVD--LWMDKVKSHCFVKLNS 339

Query: 212 EDQAVETRHALHGVTWPVSNPKTLHVDFSTTE 307
           +  A     A++ V WP  NPK L + + T +
Sbjct: 340 DADAGNVISAMNNVVWPDGNPKRLSIVYDTED 371


>U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic
           glutamate receptor subunitprotein.
          Length = 962

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +2

Query: 5   GLSKKKTV*FARPPSPPRHKQSNILFITNLVRPFTL-----LQLKNLLQRTGRIEENGFW 169
           G    +TV      S   HK + ++ +TNLV PF +     L++ NL +  G  +  GF 
Sbjct: 437 GFFSNRTVAQHSRKSQNDHKDNQVIVLTNLVAPFVMIKRECLEMANLTECQGNNKFEGFC 496

Query: 170 IDKIK 184
           ID +K
Sbjct: 497 IDLLK 501


>L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 1 protein.
          Length = 962

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +2

Query: 5   GLSKKKTV*FARPPSPPRHKQSNILFITNLVRPFTL-----LQLKNLLQRTGRIEENGFW 169
           G    +TV      S   HK + ++ +TNLV PF +     L++ NL +  G  +  GF 
Sbjct: 437 GFFSNRTVAQHSRKSQNDHKDNQVIVLTNLVAPFVMIKRECLEMANLTECQGNNKFEGFC 496

Query: 170 IDKIK 184
           ID +K
Sbjct: 497 IDLLK 501


>Z72517-3|CAA96695.1|  717|Caenorhabditis elegans Hypothetical
           protein T28F4.4 protein.
          Length = 717

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 296 KSPHVKSLDLIQAMSPHARHVLFQQLDLQFHI 201
           + P  ++  +++ MS H  H+ +Q LDLQFH+
Sbjct: 346 RDPEFRTYRILRRMSTHRTHI-YQLLDLQFHV 376


>AF067609-1|ABB51195.1|  394|Caenorhabditis elegans Hypothetical
           protein C23H5.11 protein.
          Length = 394

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = -2

Query: 427 LFHF-----CLSFQILLPKPILNCSWNCRRWSTLCFL 332
           LFHF     CL F I L   +LNC   CRRWS++ ++
Sbjct: 101 LFHFVISTLCLCFTIRLLL-LLNCIRRCRRWSSVSWV 136


>U55857-7|AAA98033.1|  217|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 3 protein.
          Length = 217

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 68  SNILFITNLVRPFTLLQLKNLLQRTGRIEENGFWIDKIKSKCYVKYETEDQAVETRHAL 244
           +NILF +N+       Q++ +  +   + E   W+   K   +++YE+ED +   R AL
Sbjct: 142 NNILFCSNIPEGTEPEQIQTIFSQFPGLREVR-WMPNTKDFAFIEYESEDLSEPARQAL 199


>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 556 APFWGPMSSFLRWTLFTSQLVSLFVFIIFAYIPLPHSSFTLP*LFHFCL 410
           A F+ P  S  + TL  S L+S+ VF++     LP +S T+P +  + L
Sbjct: 250 AVFFLPTDSGEKITLTISVLLSIVVFLLLVSKILPPTSSTIPLMAKYLL 298


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 556 APFWGPMSSFLRWTLFTSQLVSLFVFIIFAYIPLPHSSFTLP*LFHFCL 410
           A F+ P  S  + TL  S L+S+ VF++     LP +S T+P +  + L
Sbjct: 250 AVFFLPTDSGEKITLTISVLLSIVVFLLLVSKILPPTSSTIPLMAKYLL 298


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 556 APFWGPMSSFLRWTLFTSQLVSLFVFIIFAYIPLPHSSFTLP*LFHFCL 410
           A F+ P  S  + TL  S L+S+ VF++     LP +S T+P +  + L
Sbjct: 250 AVFFLPTDSGEKITLTISVLLSIVVFLLLVSKILPPTSSTIPLMAKYLL 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,109,284
Number of Sequences: 27780
Number of extensions: 329853
Number of successful extensions: 999
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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