BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_D21 (860 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved olig... 66 2e-11 U34661-1|AAA92006.1| 962|Caenorhabditis elegans ionotropic glut... 34 0.11 L16559-2|AAA27933.3| 962|Caenorhabditis elegans Glutamate recep... 34 0.11 Z72517-3|CAA96695.1| 717|Caenorhabditis elegans Hypothetical pr... 31 0.80 AF067609-1|ABB51195.1| 394|Caenorhabditis elegans Hypothetical ... 30 1.8 U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 30 2.4 Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical pr... 28 9.8 X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit ... 28 9.8 U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha nicot... 28 9.8 >U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved oligomeric golgi (cog)component protein 5 protein. Length = 580 Score = 66.5 bits (155), Expect = 2e-11 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 2/92 (2%) Frame = +2 Query: 38 RPPSPP-RHKQSNILFITNLVRPFTLLQLKNLLQRT-GRIEENGFWIDKIKSKCYVKYET 211 R SP RH SN++ I L RPFT QL+ +Q+ G I + W+DK+KS C+VK + Sbjct: 282 RVSSPSSRHPVSNVVHIRGLTRPFTEGQLRAEIQKNCGEIVD--LWMDKVKSHCFVKLNS 339 Query: 212 EDQAVETRHALHGVTWPVSNPKTLHVDFSTTE 307 + A A++ V WP NPK L + + T + Sbjct: 340 DADAGNVISAMNNVVWPDGNPKRLSIVYDTED 371 >U34661-1|AAA92006.1| 962|Caenorhabditis elegans ionotropic glutamate receptor subunitprotein. Length = 962 Score = 34.3 bits (75), Expect = 0.11 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%) Frame = +2 Query: 5 GLSKKKTV*FARPPSPPRHKQSNILFITNLVRPFTL-----LQLKNLLQRTGRIEENGFW 169 G +TV S HK + ++ +TNLV PF + L++ NL + G + GF Sbjct: 437 GFFSNRTVAQHSRKSQNDHKDNQVIVLTNLVAPFVMIKRECLEMANLTECQGNNKFEGFC 496 Query: 170 IDKIK 184 ID +K Sbjct: 497 IDLLK 501 >L16559-2|AAA27933.3| 962|Caenorhabditis elegans Glutamate receptor family (ampa)protein 1 protein. Length = 962 Score = 34.3 bits (75), Expect = 0.11 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%) Frame = +2 Query: 5 GLSKKKTV*FARPPSPPRHKQSNILFITNLVRPFTL-----LQLKNLLQRTGRIEENGFW 169 G +TV S HK + ++ +TNLV PF + L++ NL + G + GF Sbjct: 437 GFFSNRTVAQHSRKSQNDHKDNQVIVLTNLVAPFVMIKRECLEMANLTECQGNNKFEGFC 496 Query: 170 IDKIK 184 ID +K Sbjct: 497 IDLLK 501 >Z72517-3|CAA96695.1| 717|Caenorhabditis elegans Hypothetical protein T28F4.4 protein. Length = 717 Score = 31.5 bits (68), Expect = 0.80 Identities = 12/32 (37%), Positives = 21/32 (65%) Frame = -1 Query: 296 KSPHVKSLDLIQAMSPHARHVLFQQLDLQFHI 201 + P ++ +++ MS H H+ +Q LDLQFH+ Sbjct: 346 RDPEFRTYRILRRMSTHRTHI-YQLLDLQFHV 376 >AF067609-1|ABB51195.1| 394|Caenorhabditis elegans Hypothetical protein C23H5.11 protein. Length = 394 Score = 30.3 bits (65), Expect = 1.8 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%) Frame = -2 Query: 427 LFHF-----CLSFQILLPKPILNCSWNCRRWSTLCFL 332 LFHF CL F I L +LNC CRRWS++ ++ Sbjct: 101 LFHFVISTLCLCFTIRLLL-LLNCIRRCRRWSSVSWV 136 >U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna binding domain) containingprotein 3 protein. Length = 217 Score = 29.9 bits (64), Expect = 2.4 Identities = 16/59 (27%), Positives = 30/59 (50%) Frame = +2 Query: 68 SNILFITNLVRPFTLLQLKNLLQRTGRIEENGFWIDKIKSKCYVKYETEDQAVETRHAL 244 +NILF +N+ Q++ + + + E W+ K +++YE+ED + R AL Sbjct: 142 NNILFCSNIPEGTEPEQIQTIFSQFPGLREVR-WMPNTKDFAFIEYESEDLSEPARQAL 199 >Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical protein T08G11.5 protein. Length = 493 Score = 27.9 bits (59), Expect = 9.8 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = -2 Query: 556 APFWGPMSSFLRWTLFTSQLVSLFVFIIFAYIPLPHSSFTLP*LFHFCL 410 A F+ P S + TL S L+S+ VF++ LP +S T+P + + L Sbjct: 250 AVFFLPTDSGEKITLTISVLLSIVVFLLLVSKILPPTSSTIPLMAKYLL 298 >X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit of nicotinic acetylcholinereceptor protein. Length = 493 Score = 27.9 bits (59), Expect = 9.8 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = -2 Query: 556 APFWGPMSSFLRWTLFTSQLVSLFVFIIFAYIPLPHSSFTLP*LFHFCL 410 A F+ P S + TL S L+S+ VF++ LP +S T+P + + L Sbjct: 250 AVFFLPTDSGEKITLTISVLLSIVVFLLLVSKILPPTSSTIPLMAKYLL 298 >U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha nicotinic acetylcholinereceptor subunit precursor protein. Length = 493 Score = 27.9 bits (59), Expect = 9.8 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = -2 Query: 556 APFWGPMSSFLRWTLFTSQLVSLFVFIIFAYIPLPHSSFTLP*LFHFCL 410 A F+ P S + TL S L+S+ VF++ LP +S T+P + + L Sbjct: 250 AVFFLPTDSGEKITLTISVLLSIVVFLLLVSKILPPTSSTIPLMAKYLL 298 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,109,284 Number of Sequences: 27780 Number of extensions: 329853 Number of successful extensions: 999 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 964 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 998 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2150453690 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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