Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_D21
(860 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved olig... 66 2e-11
U34661-1|AAA92006.1| 962|Caenorhabditis elegans ionotropic glut... 34 0.11
L16559-2|AAA27933.3| 962|Caenorhabditis elegans Glutamate recep... 34 0.11
Z72517-3|CAA96695.1| 717|Caenorhabditis elegans Hypothetical pr... 31 0.80
AF067609-1|ABB51195.1| 394|Caenorhabditis elegans Hypothetical ... 30 1.8
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 30 2.4
Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical pr... 28 9.8
X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit ... 28 9.8
U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha nicot... 28 9.8
>U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved
oligomeric golgi (cog)component protein 5 protein.
Length = 580
Score = 66.5 bits (155), Expect = 2e-11
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Frame = +2
Query: 38 RPPSPP-RHKQSNILFITNLVRPFTLLQLKNLLQRT-GRIEENGFWIDKIKSKCYVKYET 211
R SP RH SN++ I L RPFT QL+ +Q+ G I + W+DK+KS C+VK +
Sbjct: 282 RVSSPSSRHPVSNVVHIRGLTRPFTEGQLRAEIQKNCGEIVD--LWMDKVKSHCFVKLNS 339
Query: 212 EDQAVETRHALHGVTWPVSNPKTLHVDFSTTE 307
+ A A++ V WP NPK L + + T +
Sbjct: 340 DADAGNVISAMNNVVWPDGNPKRLSIVYDTED 371
>U34661-1|AAA92006.1| 962|Caenorhabditis elegans ionotropic
glutamate receptor subunitprotein.
Length = 962
Score = 34.3 bits (75), Expect = 0.11
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +2
Query: 5 GLSKKKTV*FARPPSPPRHKQSNILFITNLVRPFTL-----LQLKNLLQRTGRIEENGFW 169
G +TV S HK + ++ +TNLV PF + L++ NL + G + GF
Sbjct: 437 GFFSNRTVAQHSRKSQNDHKDNQVIVLTNLVAPFVMIKRECLEMANLTECQGNNKFEGFC 496
Query: 170 IDKIK 184
ID +K
Sbjct: 497 IDLLK 501
>L16559-2|AAA27933.3| 962|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 1 protein.
Length = 962
Score = 34.3 bits (75), Expect = 0.11
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +2
Query: 5 GLSKKKTV*FARPPSPPRHKQSNILFITNLVRPFTL-----LQLKNLLQRTGRIEENGFW 169
G +TV S HK + ++ +TNLV PF + L++ NL + G + GF
Sbjct: 437 GFFSNRTVAQHSRKSQNDHKDNQVIVLTNLVAPFVMIKRECLEMANLTECQGNNKFEGFC 496
Query: 170 IDKIK 184
ID +K
Sbjct: 497 IDLLK 501
>Z72517-3|CAA96695.1| 717|Caenorhabditis elegans Hypothetical
protein T28F4.4 protein.
Length = 717
Score = 31.5 bits (68), Expect = 0.80
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1
Query: 296 KSPHVKSLDLIQAMSPHARHVLFQQLDLQFHI 201
+ P ++ +++ MS H H+ +Q LDLQFH+
Sbjct: 346 RDPEFRTYRILRRMSTHRTHI-YQLLDLQFHV 376
>AF067609-1|ABB51195.1| 394|Caenorhabditis elegans Hypothetical
protein C23H5.11 protein.
Length = 394
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = -2
Query: 427 LFHF-----CLSFQILLPKPILNCSWNCRRWSTLCFL 332
LFHF CL F I L +LNC CRRWS++ ++
Sbjct: 101 LFHFVISTLCLCFTIRLLL-LLNCIRRCRRWSSVSWV 136
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 68 SNILFITNLVRPFTLLQLKNLLQRTGRIEENGFWIDKIKSKCYVKYETEDQAVETRHAL 244
+NILF +N+ Q++ + + + E W+ K +++YE+ED + R AL
Sbjct: 142 NNILFCSNIPEGTEPEQIQTIFSQFPGLREVR-WMPNTKDFAFIEYESEDLSEPARQAL 199
>Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical
protein T08G11.5 protein.
Length = 493
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 556 APFWGPMSSFLRWTLFTSQLVSLFVFIIFAYIPLPHSSFTLP*LFHFCL 410
A F+ P S + TL S L+S+ VF++ LP +S T+P + + L
Sbjct: 250 AVFFLPTDSGEKITLTISVLLSIVVFLLLVSKILPPTSSTIPLMAKYLL 298
>X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 493
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 556 APFWGPMSSFLRWTLFTSQLVSLFVFIIFAYIPLPHSSFTLP*LFHFCL 410
A F+ P S + TL S L+S+ VF++ LP +S T+P + + L
Sbjct: 250 AVFFLPTDSGEKITLTISVLLSIVVFLLLVSKILPPTSSTIPLMAKYLL 298
>U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit precursor
protein.
Length = 493
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 556 APFWGPMSSFLRWTLFTSQLVSLFVFIIFAYIPLPHSSFTLP*LFHFCL 410
A F+ P S + TL S L+S+ VF++ LP +S T+P + + L
Sbjct: 250 AVFFLPTDSGEKITLTISVLLSIVVFLLLVSKILPPTSSTIPLMAKYLL 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,109,284
Number of Sequences: 27780
Number of extensions: 329853
Number of successful extensions: 999
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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