Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_D21
(860 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g39680.1 68417.m05614 SAP domain-containing protein contains ... 70 2e-12
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 30 2.3
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 29 3.0
At3g09230.1 68416.m01097 myb family transcription factor identic... 29 4.0
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 29 4.0
At5g44380.1 68418.m05434 FAD-binding domain-containing protein s... 29 5.3
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 29 5.3
At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase fam... 29 5.3
At5g44400.1 68418.m05436 FAD-binding domain-containing protein s... 28 7.0
At5g44390.1 68418.m05435 FAD-binding domain-containing protein s... 28 9.2
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD... 28 9.2
>At4g39680.1 68417.m05614 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 633
Score = 70.1 bits (164), Expect = 2e-12
Identities = 35/95 (36%), Positives = 54/95 (56%)
Frame = +2
Query: 41 PPSPPRHKQSNILFITNLVRPFTLLQLKNLLQRTGRIEENGFWIDKIKSKCYVKYETEDQ 220
PPSP + +N L I +RPFTL ++ LL +TG + FW+D IK+ CYV Y + ++
Sbjct: 449 PPSPK--EPTNSLRIDRFLRPFTLKAVQELLGKTGNV--TSFWMDHIKTHCYVSYPSVEE 504
Query: 221 AVETRHALHGVTWPVSNPKTLHVDFSTTEAFDKAL 325
A TR A++ + WP + + L +F E + L
Sbjct: 505 AAATREAVYNLQWPPNGGRHLIAEFVRAEEVKEKL 539
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 628 KNKTTPCIYWLPLSAETIAIK 690
K K P IY+LPLS E +A K
Sbjct: 606 KTKAIPRIYYLPLSEEQVAAK 626
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +2
Query: 41 PPSPPRHKQSNILFITNLVRPFTLLQLKNLLQRTGRIEENGFWIDKIKSK----CYVKYE 208
PPS ++ L+++ L T L++ ++ G + +DK+ ++ +++YE
Sbjct: 68 PPSSSSGPKTK-LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYE 126
Query: 209 TEDQAVETRHALHG 250
TE++A++ +HG
Sbjct: 127 TEEEAMKAIQGMHG 140
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 149 IEENGFWIDKIKSKCYVKYETEDQAVETRHALHG 250
+EENG + K +V+++TE AV R ALHG
Sbjct: 144 VEENG----QSKGFGFVQFDTEQSAVSARSALHG 173
>At3g09230.1 68416.m01097 myb family transcription factor identical
to transforming protein (myb) homolog GB:S22520
[Arabidopsis thaliana]
Length = 393
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 206 ETEDQAVETRHALHGVTWPV 265
E EDQA+ HA+HG W V
Sbjct: 112 EVEDQAIIAAHAIHGNKWAV 131
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +2
Query: 68 SNILFITNLVRPFTLLQLKNLLQRTGRIEENGFWIDKI--KSKCYVKYETEDQAVETRHA 241
+ +LF+ L T +++++L + GR++E F+ +++ KSK Y + E D A
Sbjct: 201 NTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAA-C 259
Query: 242 LHGVTWPVSNPKTLHVDFSTTE 307
G+ + N K V F++ E
Sbjct: 260 KEGMNGFIFNGKACVVAFASPE 281
>At5g44380.1 68418.m05434 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 541
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 59 HKQSNILFITNLVRPFTLLQLKNLLQRTGRIEENGFWI 172
H + +++ + +PF LL L L Q IE N W+
Sbjct: 120 HDFEALSYVSRIEKPFILLDLSKLKQINVDIESNSAWV 157
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 173 DKIKSKCYVKYETEDQAVETRHALHGVTWPVSNPKTLHVDFSTTEAFDK 319
D K + + AV HAL+G+ + + TLH+D + + K
Sbjct: 70 DGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSK 118
>At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase family
protein low similarity to dTDP-D-glucose-4,6-dehydratase
from Aneurinibacillus thermoaerophilus GI:16357461,
Sphingomonas sp. GI:1314581; contains Pfam profile
PF01370: NAD dependent epimerase/dehydratase family;
putative NDP-rhamnose synthase (rhm2 gene) GI:31559258
Length = 667
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = +1
Query: 31 ICKTAQSTKAQTVKYTLYHQFSQAIYTIATQKLTAKNWQDRGKW 162
ICK ++++ F+ Y + QKL WQ+R W
Sbjct: 267 ICKLFGKDPESSIQFVENRPFNDQRYFLDDQKLKKLGWQERTNW 310
>At5g44400.1 68418.m05436 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 537
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +2
Query: 59 HKQSNILFITNLVRPFTLLQLKNLLQRTGRIEENGFWI 172
H + +++ + +PF L+ L + Q I++N W+
Sbjct: 117 HDYEGLSYVSQIDKPFILMDLSKMRQVNINIQDNSAWV 154
>At5g44390.1 68418.m05435 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 542
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +2
Query: 59 HKQSNILFITNLVRPFTLLQLKNLLQRTGRIEENGFWID 175
H + +++ + +PF L+ L L Q I++ W++
Sbjct: 119 HDYEGVSYVSQIEKPFVLIDLSKLRQINVDIKDTSAWVE 157
>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
CDP-related similar to CCAAT displacement protein (CDP)
(Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
contains Pfam:PF00904 Involucrin repeat
Length = 689
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 41 PPSPPRHKQSNILFITNLVRPFTLLQLKNLLQRTG-RIEEN 160
PPS S I +TN + F L + K+LL G RI EN
Sbjct: 15 PPSSSSSSSSPIPVVTNFWKEFDLEKEKSLLDEQGLRIAEN 55
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,209,044
Number of Sequences: 28952
Number of extensions: 307639
Number of successful extensions: 808
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -