Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D19
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.62 
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    29   0.62 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.3  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    27   4.4  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   5.8  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   7.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 41/159 (25%), Positives = 48/159 (30%), Gaps = 7/159 (4%)
 Frame = +2

Query: 296  VDIPTSPRPSPSSKASLXPYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYV 475
            V IPTS  P P  K+S    +   PVP P  +    P     P P      +P   K  V
Sbjct: 1043 VPIPTSTPPVP--KSSSGAPSAPPPVPAPSSEIPSIPAPSGAP-PVPAPSGIPPVPKPSV 1099

Query: 476  KVP------VHXXXXXXXXXXXXXXXXXXXDRPYPVKVLVPPA-LPSREARPLPVXVQCP 634
              P      V                      P PV    PP   PS  A P+P     P
Sbjct: 1100 AAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159

Query: 635  TLPRGETRAIPRXXKVPVRXPTRCEXVGVPSRCPSXXLP 751
             +P+    A P         P      GVP   P    P
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +2

Query: 305  PTSPRPSPSSKASLXPYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVP 454
            P++P   P S +   P A   PVP    K  P P+  A   P  V    P
Sbjct: 992  PSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAP 1041


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 554 PYPVKVLVPPALPSREARPLP 616
           P PV  ++ PALPS  A PLP
Sbjct: 553 PSPVPTIIAPALPSTPAPPLP 573


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/61 (29%), Positives = 22/61 (36%)
 Frame = +2

Query: 569 VLVPPALPSREARPLPVXVQCPTLPRGETRAIPRXXKVPVRXPTRCEXVGVPSRCPSXXL 748
           V  PP+LP      LP     P+LP G   A P     P+  P        P   P+   
Sbjct: 417 VPTPPSLPPSAPPSLPPSAP-PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA 475

Query: 749 P 751
           P
Sbjct: 476 P 476



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 302 IPTSPRPSPSSKASLXPYA-VDRPVPYPVEKHVPYPVKVAVPQP 430
           +PT P   PS+  SL P A    P+  P    +P    +A P P
Sbjct: 417 VPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 401  YPVKVAVPQPYEVVKHVPYHVKEYVKV 481
            Y +K+ VP P+  ++H P HV  Y ++
Sbjct: 2322 YSLKLDVPLPFFALEHRPTHVISYTEL 2348


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 133 QLCFLSSSSHWQPLLLPAGKLSRA 62
           ++  L     WQP+L+P GK+ RA
Sbjct: 223 EMAHLLKDPIWQPILMPNGKVLRA 246


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 371 VPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVK 478
           + YPV +  P  V   V Q YEV   V YH K+ +K
Sbjct: 304 ITYPVAETAPSLVVKVVNQDYEV--KVFYHYKDNIK 337


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 314 PRPSPSSKASLXPYAVDRPVPYPVEKHVPYPVKV 415
           P PS S+ +S+ P A    V   V  + PYP ++
Sbjct: 216 PPPSDSANSSVTPIAAPLVVNGKVSGNPPYPAEI 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,584
Number of Sequences: 5004
Number of extensions: 51395
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)