Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D18
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   1.4  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    27   3.3  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    27   3.3  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    27   4.4  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   4.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   5.8  
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe...    26   7.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.6  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    26   7.6  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    26   7.6  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 524 TRRRSPTVSLSCSNSQSSTALANRPATTLTRN--LXAKCSTTARTASSTP 667
           T   S T + + S   SS + AN    T T +  L +  STTA +ASSTP
Sbjct: 309 TSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTP 358



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
 Frame = +2

Query: 542 TVSLSCSNSQSSTALANRPATTLTRN----LXAKCSTTARTASSTPGSARTV 685
           T S+  ++S SST L++  +TT T      L +  STTA +ASSTP    T+
Sbjct: 525 TSSVLPTSSVSSTPLSSANSTTATSASSTPLTSVNSTTATSASSTPFGNSTI 576



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +2

Query: 542 TVSLSCSNSQSSTALANRPATTLTRN----LXAKCSTTARTASSTPGSA 676
           T SL  S++ SST L++  +TT T      L +  STT  +ASSTP S+
Sbjct: 278 TSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSS 326



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
 Frame = +2

Query: 542 TVSLSCSNSQSSTALANRPATTLTRN----LXAKCSTTARTASSTPGSA 676
           T S+  ++S SST L++  +TT T      L +  STTA +ASSTP S+
Sbjct: 411 TSSVLPTSSVSSTPLSSANSTTATSASSTPLSSVNSTTATSASSTPLSS 459



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = +2

Query: 542 TVSLSCSNSQSSTALANRPATTLTRN----LXAKCSTTARTASSTP 667
           +V+ + + S SST L++  +TT T      L +  STTA +ASSTP
Sbjct: 443 SVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTP 488



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 524 TRRRSPTVSLSCSNSQSSTALANRPATTLTRNLXAKCSTTARTASSTP 667
           T   S   S + SNS +S++LA+    + T       S ++  +SSTP
Sbjct: 207 TATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTP 254



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 524 TRRRSPTVSLSCSNSQSSTALANRPATTLTRNLXAKCSTTARTASSTP 667
           T   + +  LS  NS ++T+ ++ P T++        STTA +ASSTP
Sbjct: 334 TATSTSSTPLSSVNSTTATSASSTPLTSVN-------STTATSASSTP 374



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 542 TVSLSCSNSQSSTALANRPATTLTRNLXAKCSTTARTASSTP 667
           + S + S++Q +T+     +T  +  L +  STTA +ASSTP
Sbjct: 266 SASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTP 307


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 551 LSCSNSQSSTALANRPATTLTRNLXAKCSTTARTASSTPGSARTVH 688
           L  + S+      N  +TT  R      +TTART  +TP    T +
Sbjct: 127 LKVAPSKIRAPAGNHSSTTANRTTSTPTTTTARTTRTTPRPTATTN 172


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 275 RRLHTTLCPAASVQHLPWLNWLGTNNGHNSRSSKNTSYLPGSNS 406
           R++HT      + + +  L      N   + S++ ++YLPGS++
Sbjct: 177 RKIHTNTSSNGTSRRVSGLGSFMAQNSSETSSNRTSAYLPGSST 220


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 293 LCPAASVQHLPWLNWLGTNNGHNSRSSKNTSYLP 394
           L   A +++ PW+  +    GH S+  KNT+  P
Sbjct: 360 LLRGAQLRNTPWVYGIVVFTGHESKLMKNTTETP 393


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +1

Query: 175 DEEDSIPDVGVEEDSDELALDQEETRNLRPRAYT 276
           D++ S+P  G+ ED+D L+L +  + + R  +++
Sbjct: 434 DDKPSLPPRGLSEDNDSLSLQKTGSSDTRRSSFS 467


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 244 PPDPEPVHRCLPPLPRQVYCLPHPKPSPLRPA 149
           P  P P     PP+P +   +P   P P +PA
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPA 178


>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 226 VHRCLPPLPRQVYCLPHPKPSPLRPAKVLRENSTSFPLS 110
           +H+CLPPL R    +   K +P    +    NS   PLS
Sbjct: 58  IHKCLPPLQRN-NTIRKRKRNPFLADRPYCINSEDMPLS 95


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 244  PPDPEPVHRCLPPLPRQVYCLPHPKPSPLRP 152
            PP P+P    +PP+P      P PKPS   P
Sbjct: 1102 PPVPKP-SVAVPPVPAPSGAPPVPKPSVAAP 1131


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 157 GVAMASDEEDSIPDVGVEEDSDELALDQEE 246
           G A+A +  D   D+ VEED D++     E
Sbjct: 336 GEALALENYDGFSDLDVEEDEDDVESSSNE 365


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 286 MQSACKHADEDSLFPPDPEPVHRCLPPLPRQVYCLP 179
           ++S  K  D    FP  P   H+ L PLP  +  LP
Sbjct: 195 IESENKKDDIVESFPKYPVDAHKLLEPLPTPIPSLP 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,171
Number of Sequences: 5004
Number of extensions: 51670
Number of successful extensions: 236
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)