Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_D18
(839 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 30 2.0
SB_47133| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 30 2.0
SB_23143| Best HMM Match : Keratin_B2 (HMM E-Value=0.025) 30 2.7
SB_3697| Best HMM Match : Mucin (HMM E-Value=4.2) 30 2.7
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_50230| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41) 29 4.7
SB_3225| Best HMM Match : PKD (HMM E-Value=8.5e-09) 29 4.7
SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055) 29 6.2
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 6.2
SB_34828| Best HMM Match : W2 (HMM E-Value=6.9) 29 6.2
SB_38437| Best HMM Match : VWA (HMM E-Value=0) 28 8.2
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 28 8.2
SB_6679| Best HMM Match : Keratin_B2 (HMM E-Value=0.0084) 28 8.2
SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73) 28 8.2
SB_30399| Best HMM Match : ERM (HMM E-Value=0.37) 28 8.2
>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1207
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 566 SQSSTALANRPATTLTRNLXAKCSTTARTASSTPGSARTVHIP 694
S ST A PA T + STT ++TP S+RT+ IP
Sbjct: 840 SSDSTTTAPPPAPTSSLATSGNTSTTISDNTATPTSSRTMQIP 882
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 592 QTGYYADEELXCEVFHYCQDSVKHSWICPDGS 687
QT AD C V HYC D + CP G+
Sbjct: 1129 QTPDQADNANICPVGHYCPDGTGEPYNCPKGT 1160
>SB_47133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 536 SPTVSLSCSNSQSSTALANRPATTL-TRNLXAKCSTTARTASSTPGSART 682
SPT S S + Q +T + P+TT R + T R +STP + T
Sbjct: 56 SPTSSTSTTQHQVTTTSVSTPSTTTPPRTTSISTTKTTRVTTSTPSAVTT 105
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 635 STTARTASSTPGSART-VHIPPXAP 706
S + + SSTPGS RT +H+PP +P
Sbjct: 321 SPLSSSGSSTPGSRRTPIHLPPTSP 345
>SB_23143| Best HMM Match : Keratin_B2 (HMM E-Value=0.025)
Length = 348
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 289 CMQSACKHADEDSLFPPDPEPVHR--CLPPLPRQVYCLPHPKPSPLRPAKV 143
C+Q + + + S P P +R C+ P PR+ Y + +PSP R +V
Sbjct: 220 CVQPSPRRSYRVSCVQPSPRRSYRVSCVQPSPRRCYRVSCVQPSPRRSYRV 270
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 289 CMQSACKHADEDSLFPPDPEPVHR--CLPPLPRQVYCLPHPKPSPLRPAKV 143
C+Q + + + S P P +R C+ P PR+ Y + +PSP R +V
Sbjct: 233 CVQPSPRRSYRVSCVQPSPRRCYRVSCVQPSPRRSYRVSCVQPSPRRSYRV 283
>SB_3697| Best HMM Match : Mucin (HMM E-Value=4.2)
Length = 120
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 548 SLSCSNSQSSTALANRPATTLTRNLXAKCSTTARTASSTPGSARTVHIPP 697
S + + +S+ ++P + AK T RT SSTPGS+ T P
Sbjct: 41 SHTTTTPSTSSGTTSKPTRVPSNPTMAKVITKPRTTSSTPGSSSTTPQKP 90
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 580 CVGKQTGYYADEELXCEVFHYCQDSVKHSWICP 678
CVGKQ G YAD C F C + + CP
Sbjct: 518 CVGKQNGKYADAN-NCNGFVMCSNGYIYYMDCP 549
>SB_50230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -2
Query: 244 PPDPEPVHRCLPPLPRQVYCLPHPKPSPLRPAK--VLRENSTSFPLSRTEKLSVKNYNTD 71
PP P P P L + PH P P + K +R+ PL + ++ + D
Sbjct: 50 PPPPVPEPEPEPDLDLDLPVPPHETPRPKKTGKRQPMRKAKADRPLGPSPPSALPDL-AD 108
Query: 70 FCIRQKAREMTETRQRLTK 14
F + + + M +RQ + K
Sbjct: 109 FLTQPRRKRMKPSRQAIKK 127
>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
Length = 1093
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/56 (32%), Positives = 23/56 (41%)
Frame = +2
Query: 596 PATTLTRNLXAKCSTTARTASSTPGSARTVHIPPXAPDLHAXDXXNXCQNRXXTLR 763
P T+TR KCS A + P S+ T PP + Q+R TLR
Sbjct: 224 PIVTVTRCTDTKCSKPALVTPNIPRSSDTPSSPPATSSI-TIPKATDTQSRPATLR 278
>SB_3225| Best HMM Match : PKD (HMM E-Value=8.5e-09)
Length = 1080
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 178 EEDSIPDVGVEEDSDELALDQEETRNLRPRAYTPTAYNALPSGFRPTP 321
+ED + DVG + D D+ E+ L P T Y SG+R P
Sbjct: 494 DEDYMCDVGFKRDRDDNECYPEDLAVLVPDPCPETTYYMKSSGYRKVP 541
>SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055)
Length = 695
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 244 PPDPEPVHRCLPPLP-RQVYCLPHPKPSPLRPAKV 143
PP P P PPLP ++V +P PKP P R +K+
Sbjct: 319 PPLP-PKRGGGPPLPPKRVANIPSPKPRPPRASKI 352
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 635 STTARTASSTPGSARTVHIPPXAP 706
S + T SSTP S RT+ +PP +P
Sbjct: 829 SPLSSTDSSTPRSRRTIDLPPTSP 852
>SB_34828| Best HMM Match : W2 (HMM E-Value=6.9)
Length = 184
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -2
Query: 250 LFPPDPEPVHRCLPPLPRQVYCLPHPKPSPLRPAK 146
L P P P P PR+V P PKP RP +
Sbjct: 134 LLPTPPPPTPPQSTPKPRRVLPTPPPKPPTPRPPR 168
>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
Length = 3445
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +2
Query: 230 LWIRRKQGIFVRVLTRRLHTTLCPAASVQHLPWLNWLGTNNGHNSRSSK 376
+WI ++ +F R +TR+ +T ++H W N++ H + K
Sbjct: 1109 MWIIQRNVLFARFVTRKKRSTPALTVRIKHRAW-NFVAATYDHRTGVGK 1156
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/60 (25%), Positives = 32/60 (53%)
Frame = +2
Query: 536 SPTVSLSCSNSQSSTALANRPATTLTRNLXAKCSTTARTASSTPGSARTVHIPPXAPDLH 715
SP S+ CS+ +++ + +PA ++ L C T+++ ++ S+ T+ P P+ H
Sbjct: 2458 SPQPSVPCSDIPLASSSSLQPAPSIADAL--SCMTSSQRVTAQSSSSTTMSPQPSVPNEH 2515
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +1
Query: 580 CVGKQTGYYADEE--LXCEVFHYCQDSVKHSWICPDGS 687
C+ Q+G + + + C V HYC +CP G+
Sbjct: 694 CLAGQSGTFVNGTHCIPCHVGHYCPSQSNKPQVCPSGT 731
>SB_6679| Best HMM Match : Keratin_B2 (HMM E-Value=0.0084)
Length = 292
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 289 CMQSACKHADEDSLFPPDPEPVHR--CLPPLPRQVYCLPHPKPSPLRPAKV 143
C+Q + + + S P P +R C+ P PR+ Y + PSP R +V
Sbjct: 158 CVQPSPRRSYRVSCVQPSPRRSYRVSCVQPSPRRSYRVSCVHPSPRRSYQV 208
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 289 CMQSACKHADEDSLFPPDPEPVHR--CLPPLPRQVYCLPHPKPSPLRPAKV 143
C+Q + + + S P P +R C+ P PR+ Y + +PSP R +V
Sbjct: 171 CVQPSPRRSYRVSCVQPSPRRSYRVSCVHPSPRRSYQVSCVQPSPKRCYRV 221
>SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73)
Length = 611
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +2
Query: 551 LSCSNSQSSTALANRPATTLTRNLXAKCST--TARTASSTPGSARTVHIPPXAP 706
++ +S SS++L++ P++ L A + ++ ++SS+P +R + +PP +P
Sbjct: 275 IASRHSSSSSSLSSVPSSFLASTPRAATLSPLSSSSSSSSPRPSRDIELPPTSP 328
>SB_30399| Best HMM Match : ERM (HMM E-Value=0.37)
Length = 562
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 539 PTVSLSCSNSQSSTALANRPATTLTRNLXAKCSTTARTASSTPGSARTVHI 691
P VSL CS QSS+A+ A + S T SST H+
Sbjct: 375 PAVSLHCSEQQSSSAVEKYSANNNRHIASNQNSRELSTVSSTQNIVAPTHL 425
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,946,383
Number of Sequences: 59808
Number of extensions: 436742
Number of successful extensions: 1837
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1815
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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