Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D18
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.87 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +2

Query: 554 SCSNSQSSTALANRPATTLTR-NLXAKCSTTARTASSTPGSARTVHIPPXAPDLHAXD 724
           S S++ S       PATT+T        +TT  T ++TP + +        P +   D
Sbjct: 640 SLSSTHSHPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVDEVD 697


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 15/69 (21%), Positives = 27/69 (39%)
 Frame = -2

Query: 220 RCLPPLPRQVYCLPHPKPSPLRPAKVLRENSTSFPLSRTEKLSVKNYNTDFCIRQKAREM 41
           RC    PR+ +    P    L    +    +T+ P++ T+   V+N+    C    +   
Sbjct: 298 RCFTGGPRKSHESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQ 357

Query: 40  TETRQRLTK 14
            + R  L K
Sbjct: 358 KKLRFHLAK 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,623
Number of Sequences: 438
Number of extensions: 4123
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)