Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D16
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch...    31   0.28 
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    30   0.36 
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    29   0.64 
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    28   1.9  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        27   4.5  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    26   5.9  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    26   7.8  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    26   7.8  

>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 198

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 195 GAFGAAYQQEDGINFKEETDAEGNRKGSYSYIDPSGQRKTVNYI 326
           G+F     Q  G+NF E+T +  N + ++S  D  GQR+ VN +
Sbjct: 33  GSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVNML 76


>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +3

Query: 399 GYTPDP---RYNSPDYKAPQYSAPQQYVSQAQPRNYGGKP 509
           GY P P    Y  P+Y  PQ + PQQ  +  Q    GG P
Sbjct: 11  GYAPAPPQQAYGGPNYYPPQQNYPQQGYAPPQGYPQGGYP 50


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 465 VVAHYIVVPCNLESCIEDRACSQE*ERQLEAQSECDRQRLGIHFC 331
           V AH+ +VP    S +    C+Q+ ER++       + +L   FC
Sbjct: 118 VFAHFDIVPYTTYSILTKYRCAQDKEREIVGLINASQSKLRYKFC 162


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 101 ARHGHYDKGGHNKPVHFERSKC 36
           +RH H+ +  H  P  + RSKC
Sbjct: 64  SRHAHFHETVHENPSEYSRSKC 85


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +3

Query: 408 PDPRYNSPDYKAPQYSAPQQYVSQAQPRNYGGKPN 512
           P P   +  Y  P YS PQ   +Q Q  N  G  N
Sbjct: 84  PPPNTGANSYGNPNYSGPQLPNTQTQSYNLAGGGN 118


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 284 IYRSEWP-EEDSELHRRQKWIPSRWRS 361
           I ++EW  EED +L    K +P++WR+
Sbjct: 56  IKKTEWSREEDEKLLHLAKLLPTQWRT 82


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/73 (20%), Positives = 30/73 (41%)
 Frame = +1

Query: 430 QITRHHNIVRHNNTSRKHSPVTTAASPMKTTDSTILSYTNKRTTQLHNRDISLNNSTKLS 609
           + TRH N+ RH     K  P+      +K     +L    +   + HN    +   +K  
Sbjct: 39  RFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLL---KRHIQRFHNDKSVIEEGSKDV 95

Query: 610 HNIKPSLSRNTNH 648
            ++K + S+  ++
Sbjct: 96  LDVKAAASQQEDN 108


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 141 GDPKTAAIVQEARYLSGNGAFGAAYQQEDGINFKEETDAEG 263
           GD KT   +Q+A+ +  NG        E+ + F+EE   +G
Sbjct: 111 GDAKT---IQKAKEVGANGFIIVDLPPEEAVGFREECKKQG 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,978
Number of Sequences: 5004
Number of extensions: 53891
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)