Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_D16
(855 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653... 35 0.095
01_05_0072 + 17891199-17892279,17893751-17893884,17893966-178941... 32 0.67
11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741 30 2.7
08_01_0178 - 1509100-1511214 30 2.7
07_03_1690 - 28716998-28717091,28717203-28717897,28718264-287184... 29 4.7
08_01_0177 + 1504472-1505033,1505035-1506647 29 6.2
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117... 29 6.2
08_01_0333 + 2977397-2977648,2978416-2978784,2980108-2980169,298... 28 8.3
04_01_0129 + 1408408-1409055,1409107-1410013,1410145-1410294,141... 28 8.3
02_03_0196 + 16246729-16246859,16247133-16247304 28 8.3
01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387 28 8.3
>07_03_1284 +
25463476-25463557,25465088-25465220,25465307-25465378,
25465476-25465544,25465629-25465700,25465792-25465860,
25466155-25466220,25466299-25466364,25466452-25466786,
25466931-25467214,25467796-25468067,25468152-25468287,
25468625-25468755,25468890-25469046,25469185-25469327,
25470105-25470190,25471530-25472962,25474563-25474712,
25475221-25475322,25475467-25475568
Length = 1319
Score = 34.7 bits (76), Expect = 0.095
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 408 PDPRYNSPDYKAPQYSAPQQYVSQAQPRNYGGKPNEDDGQYYPEL 542
P P Y SP YK+P Y +PQ A P DDG+ + +L
Sbjct: 223 PPPPYQSPPYKSPPYKSPQSR-QPAPPTTTVNNNPSDDGRKHSKL 266
>01_05_0072 +
17891199-17892279,17893751-17893884,17893966-17894115,
17894207-17894524
Length = 560
Score = 31.9 bits (69), Expect = 0.67
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -3
Query: 265 LPSASVSSLKLMPSSCW*AAPNAP-FPLRYRASCTIAAVLGSPAYLGTRLAPSCCWHDTA 89
LPSA+ + S CW A + P F R+RA T + +LG G+ P +H A
Sbjct: 18 LPSAASLQRAALASKCWLAVASGPDFLRRFRARHTSSPLLGLFVSHGSSGLP--VFHPAA 75
Query: 88 TMTKADTISLYILNG 44
T+ + +L G
Sbjct: 76 TVRSDPDLGAAVLGG 90
>11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741
Length = 375
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 538 SYTNKRTTQLHNRDISLNNSTKLSHNIKPSLSRNTNHNLNTSLN 669
S NK TT++ N IS S K+ H+++ ++ + L + +N
Sbjct: 169 SILNKMTTEMENPQISQETSEKVIHSVESNVIKTNGTELCSKVN 212
>08_01_0178 - 1509100-1511214
Length = 704
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 102 QQHEGARRVPKYAGDPKTAAIVQEARYLSGNGAFGAAYQQ 221
+Q AR P AGD + AA++ E R LS A Y+Q
Sbjct: 568 RQEALARSAPGLAGDARCAALLSELRELSARVASRREYEQ 607
>07_03_1690 -
28716998-28717091,28717203-28717897,28718264-28718446,
28718552-28719585,28719805-28719978,28720051-28720168,
28720339-28720521,28720647-28720739,28720981-28721166,
28722247-28722507
Length = 1006
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 448 NIVRHNNTSRKHSPVTTAASPMKTT 522
N ++ +NTS+ SP T A+SP+KT+
Sbjct: 895 NGLQESNTSQPSSPATEASSPIKTS 919
>08_01_0177 + 1504472-1505033,1505035-1506647
Length = 724
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 102 QQHEGARRVPKYAGDPKTAAIVQEARYLSGNGAFGAAYQQ 221
+Q AR + AGD + AA+V E R LS A Y+Q
Sbjct: 623 RQEALARSARRLAGDARCAALVSELRELSARVANRREYEQ 662
>01_06_0789 -
32010131-32010330,32010438-32010866,32011658-32011752,
32011836-32011933,32012586-32012942,32013615-32013792,
32013856-32013936,32014441-32014548,32014916-32015178
Length = 602
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 93 VSCQQHEGAR-RVPKYAGDPKTAAIVQEARYLSGNGAFGAA 212
+ C+ EG+ R + GD K + +Q+A + NGA GAA
Sbjct: 254 MDCKNFEGSEERKALFQGDHKNSIHMQQAANAAVNGAIGAA 294
>08_01_0333 +
2977397-2977648,2978416-2978784,2980108-2980169,
2980271-2980418
Length = 276
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -1
Query: 660 GIEVVVGIAAEAGLDIVAELGTVVEADISVVELRSSLVRIA 538
G E +VG+AA AGL +VA + +VV S + SL A
Sbjct: 111 GAETLVGVAASAGLAVVAVVLSVVHISGSHLNPAVSLAMAA 151
>04_01_0129 +
1408408-1409055,1409107-1410013,1410145-1410294,
1419174-1419634,1419683-1419999,1420114-1420477
Length = 948
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +3
Query: 105 QHEGARRV-PKYAGDPKTAAIVQEARYLSGNGAFGAAYQQEDGI--NFKEETDAEGNRKG 275
+H+ R PK+ A+V++ + + GNG + EDG+ K+ +A + K
Sbjct: 477 EHKADHRTKPKHRSGKTVFAMVKDLKIVFGNGPGSQPIESEDGVYGKLKDTLEACNDLKH 536
Query: 276 SYSYID--PSGQRKTVNYIA 329
D P ++K ++Y++
Sbjct: 537 MEQRGDLHPEPKKKGIHYLS 556
>02_03_0196 + 16246729-16246859,16247133-16247304
Length = 100
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 678 GAGVQAGIEVVVGIAAEAGLDIVAELGTVVEADISV 571
G G+ GI + +GI G+D+ ++ V+ D+ V
Sbjct: 57 GIGIGIGIGIGIGIGIGIGIDVDVDVDVDVDVDVDV 92
>01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387
Length = 244
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3
Query: 286 YE*LPFLLPSASVSSLKLMPS 224
YE LP +LP V+S++LMPS
Sbjct: 180 YEPLPVMLPPPPVASMQLMPS 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,406,302
Number of Sequences: 37544
Number of extensions: 389566
Number of successful extensions: 1541
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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