Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D15
         (851 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    28   0.082
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    24   1.3  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       23   2.3  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    23   2.3  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.3  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   4.1  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   7.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.4  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 28.3 bits (60), Expect = 0.082
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 521 PCSRHCVLSHRLRRADKRLTFTST*ILIESFTNH 420
           P  + C L HRL +  K+L  T   IL+  FT+H
Sbjct: 211 PLCKSCDLHHRLSKLIKQLNATYGLILLLMFTSH 244


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 342 RVIPD*CACEKASGVVFQFSPAPLSAHVDVEVVDLE 235
           RV P+  + E  S      SPA   A  D+  VDLE
Sbjct: 8   RVAPEESSSEVTSSSALVMSPANSLASTDIGDVDLE 43


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = +3

Query: 222 KELLAQGLLPQRQHERSKEQE-----KIEKQRQMPFHMH 323
           KE+  Q    + + ER K+Q+     KIE+Q     H H
Sbjct: 69  KEINEQARREREEQERHKQQQQEKQQKIEQQTHSSIHQH 107


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = +3

Query: 222 KELLAQGLLPQRQHERSKEQE-----KIEKQRQMPFHMH 323
           KE+  Q    + + ER K+Q+     KIE+Q     H H
Sbjct: 220 KEINEQARREREEQERHKQQQQEKQQKIEQQTHSSIHQH 258


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = +3

Query: 222 KELLAQGLLPQRQHERSKEQE-----KIEKQRQMPFHMH 323
           KE+  Q    + + ER K+Q+     KIE+Q     H H
Sbjct: 279 KEINEQARREREEQERHKQQQQEKQQKIEQQTHSSIHQH 317


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +3

Query: 159 RRGNVKEAHGCLAELMMTGKPKELLAQGLLPQRQHERSKEQEKIEKQR 302
           +R  +K+A G    L +     +L+AQGL        +KE+E++++ +
Sbjct: 279 KRAKIKKASGTKNPLAL-----QLMAQGLYNHSTIPLTKEEEELQEMQ 321


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 624 HEHYQLRPLNPKPWHSFFHSRCNL 553
           H H Q RP    P+ +   + C L
Sbjct: 55  HHHLQARPPQDSPYDASVAAACKL 78


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 594  PKPWHSFFHSRCNLGKLSNHLCA 526
            P P +   + RC LG+L    CA
Sbjct: 1110 PDPHNCNAYYRCVLGELRKQYCA 1132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,354
Number of Sequences: 336
Number of extensions: 3716
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23555563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)