Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D15
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...   246   4e-66
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.63 
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    28   1.9  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    26   5.9  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   5.9  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
            eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score =  246 bits (601), Expect = 4e-66
 Identities = 123/249 (49%), Positives = 169/249 (67%), Gaps = 3/249 (1%)
 Frame = +3

Query: 3    LSHIYHHALHDNWFQARDLLLMSHLQETVQHSDPSTQILYNRTMANLGLCAFRRGNVKEA 182
            L HIYH AL + +++ARD+LLMSHLQ++V  +D +TQIL+NRTM  +GLCAFR G V+E 
Sbjct: 578  LCHIYHEALQNRFYKARDMLLMSHLQDSVHAADIATQILHNRTMVQIGLCAFRNGMVQET 637

Query: 183  HGCLAELMMTGKPKELLAQGLLPQRQHERSKEQEKIEKQRQMPFHMHINLELLECVYLVS 362
               L ++  TG+ KELL QG+   +  + + +Q++++KQ  +PFHMHINLELLECVYL  
Sbjct: 638  QYALQDISTTGRVKELLGQGIQAPKFGQFTPDQDRLDKQLVLPFHMHINLELLECVYLTC 697

Query: 363  AMLIEIPYMAAHE---FDARRRMISKTFYQNLRASERQALVGPPESMREHAVAAARAMRR 533
            +ML+EIP MAA      D+R+R+IS+ F + L   +RQ  VGPPE+ RE+ + A++A+  
Sbjct: 698  SMLMEIPAMAAASSTASDSRKRVISRPFRRMLEYIDRQLFVGPPENTREYIMQASKALAD 757

Query: 534  GDWRACLNYIVNEKMNAKVWDLMVGADNVRAMLGRLIREESLRTYLXTYAHVYASLSLRP 713
            G+WR C  +I       K+W LM  AD ++ ML   IREE LRTYL  YA  Y S+SL  
Sbjct: 758  GEWRRCEEFI----HAIKIWSLMPDADKIKQMLSEKIREEGLRTYLLAYAAFYDSVSLEF 813

Query: 714  LADMFELHV 740
            LA  F+L V
Sbjct: 814  LATTFDLPV 822


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +3

Query: 9    HIYHHALHDNWFQARDLLLMSHLQETVQHSDPSTQILYNRTMANLGLCAFRRGNVKE 179
            ++ ++  +DN F   DLL++  L   + + DP+  +  NR  + L    F +G VK+
Sbjct: 912  YLKNYNFNDNQFLFMDLLIIFPLSAAMSYFDPAQNLTSNRPNSTL----FGKGRVKD 964


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 618 HYQLRPLNPKPWHSFFHS 565
           H +++ LNP PW SF H+
Sbjct: 115 HEKMKELNPAPWDSFKHN 132


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +3

Query: 576 MNAKVWDLMVGA---DNVRAMLGRLIREESLRTYLXTYAH 686
           + A+  +L+VG    D++R  L   I  E + TYL T+AH
Sbjct: 320 LRARFSNLVVGVITRDSIRRALMNGIAAEQIITYLTTHAH 359


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 498 EHAVAAARAMRRGDWRACLNYIVNEK 575
           +HA   A+AMR G   ACL Y+ + +
Sbjct: 463 QHANRVAKAMRVGSLIACLAYVCDSR 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,105,111
Number of Sequences: 5004
Number of extensions: 61832
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)