Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D15
         (851 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0)                     246   2e-65
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)                      33   0.29 
SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  

>SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0)
          Length = 564

 Score =  246 bits (601), Expect = 2e-65
 Identities = 110/158 (69%), Positives = 133/158 (84%)
 Frame = +3

Query: 3   LSHIYHHALHDNWFQARDLLLMSHLQETVQHSDPSTQILYNRTMANLGLCAFRRGNVKEA 182
           + H+YHHALH+ WF ARDL+LMSHLQET+QHSD  TQILYNRTM  LGLCAFR G +K+A
Sbjct: 406 MCHVYHHALHNRWFAARDLMLMSHLQETIQHSDILTQILYNRTMVQLGLCAFRHGMIKDA 465

Query: 183 HGCLAELMMTGKPKELLAQGLLPQRQHERSKEQEKIEKQRQMPFHMHINLELLECVYLVS 362
           H  L ++  +G+ KELLAQGL+ QRQ ER+ EQEKIEK+RQ+PFHMHINLELLECVYL S
Sbjct: 466 HNALHDVQSSGRAKELLAQGLMQQRQFERTPEQEKIEKRRQVPFHMHINLELLECVYLTS 525

Query: 363 AMLIEIPYMAAHEFDARRRMISKTFYQNLRASERQALV 476
           AML+EIP+MAAH +D RRR+ISK+F+  LR S++Q LV
Sbjct: 526 AMLLEIPFMAAHAYDYRRRVISKSFHYQLRQSDKQTLV 563


>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
          Length = 1282

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -3

Query: 414 VGHQIRVLPCTESQSASLILNRHTRVIPD*CACEKASGVVFQFSPAPLSAHVDV 253
           V HQ+ +  C+ S++       H  V P  C+C   S  V     +PLSAHVDV
Sbjct: 251 VSHQVLMSMCSPSRA-------HVDVFPIACSCRCVSHRVLMSMCSPLSAHVDV 297


>SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 643 YVKSPYVPICXHMLTCTRHCHCVLSLTC 726
           Y+  PY   C + +TC  H  C   +TC
Sbjct: 684 YITCPYGITCQYDITCPYHITCPYHITC 711


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,140,048
Number of Sequences: 59808
Number of extensions: 490517
Number of successful extensions: 1412
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)