Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D15
         (851 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56150.1 68416.m06241 eukaryotic translation initiation facto...   272   1e-73
At3g22860.1 68416.m02882 eukaryotic translation initiation facto...   242   2e-64
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila...    30   2.2  
At1g69560.1 68414.m07999 myb family transcription factor (MYB105...    28   6.9  

>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
            subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
            identical to SP|O49160 Eukaryotic translation initiation
            factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
            {Arabidopsis thaliana}
          Length = 900

 Score =  272 bits (668), Expect = 1e-73
 Identities = 132/244 (54%), Positives = 179/244 (73%)
 Frame = +3

Query: 3    LSHIYHHALHDNWFQARDLLLMSHLQETVQHSDPSTQILYNRTMANLGLCAFRRGNVKEA 182
            L  I HHAL DN+  ARDLLLMSHLQ+ +QH D STQIL+NRTMA LGLCAFR G + E+
Sbjct: 501  LCDINHHALMDNFVTARDLLLMSHLQDNIQHMDISTQILFNRTMAQLGLCAFRAGMITES 560

Query: 183  HGCLAELMMTGKPKELLAQGLLPQRQHERSKEQEKIEKQRQMPFHMHINLELLECVYLVS 362
            H CL+EL    + +ELLAQG+   R HE++ EQE++E++RQMP+HMH+NLELLE V+L+ 
Sbjct: 561  HSCLSELYSGQRVRELLAQGVSQSRYHEKTPEQERMERRRQMPYHMHLNLELLEAVHLIC 620

Query: 363  AMLIEIPYMAAHEFDARRRMISKTFYQNLRASERQALVGPPESMREHAVAAARAMRRGDW 542
            AML+E+P MAA+  DA+RR+ISK F + L  SERQA   PPE++R+H +AA RA+ +GD+
Sbjct: 621  AMLLEVPNMAANSHDAKRRVISKNFRRLLEISERQAFTAPPENVRDHVMAATRALTKGDF 680

Query: 543  RACLNYIVNEKMNAKVWDLMVGADNVRAMLGRLIREESLRTYLXTYAHVYASLSLRPLAD 722
            +     ++N   + +VW L+   D++  M+   I+EE+LRTYL TY+  Y SLSL  LA 
Sbjct: 681  QKAFE-VLN---SLEVWRLLKNRDSILDMVKDRIKEEALRTYLFTYSSSYESLSLDQLAK 736

Query: 723  MFEL 734
            MF++
Sbjct: 737  MFDV 740


>At3g22860.1 68416.m02882 eukaryotic translation initiation factor 3
            subunit 8, putative / eIF3c, putative similar to
            eukaryotic translation initiation factor 3 subunit 8
            (eIF3 p110) [Arabidopsis thaliana] SWISS-PROT:O49160
          Length = 800

 Score =  242 bits (593), Expect = 2e-64
 Identities = 122/245 (49%), Positives = 167/245 (68%), Gaps = 1/245 (0%)
 Frame = +3

Query: 3    LSHIYHHALHDNWFQARDLLLMSHLQETVQHSDPSTQILYNRTMANLGLCAFRRGNVKEA 182
            L  IY HAL DN+  ARDLLLMSHLQE +QH D STQIL+NRTMA LGLCAFR G + E+
Sbjct: 454  LCDIYQHALMDNFVTARDLLLMSHLQENIQHMDISTQILFNRTMAQLGLCAFRVGMITES 513

Query: 183  HGCLAELMMTGKPKELLAQGLLPQRQHERSKEQEKIEKQRQMPFHMHINLELLECVYLVS 362
            H CL+EL    + +ELL QG+   R HE++ EQ  +E++ Q+P+HM+INLELLE VYL  
Sbjct: 514  HSCLSELYSGNRVRELLGQGVSQSRDHEKTTEQMLMERRTQIPYHMNINLELLEAVYLTC 573

Query: 363  AMLIEIPYMAAHEFDARRRMISKTFYQNLRASERQALVGPPESMREHAVAAARAMRRGDW 542
            AML+E+P MAA+  D++ + ISK   + L  SE+QA   PPE++R H +AA RA+ +G++
Sbjct: 574  AMLLEVPNMAANSHDSKHKPISKNIQRLLEKSEKQAFTAPPENVRVHVIAATRALIKGNF 633

Query: 543  RACLNYIVNEKMNAKVWDLMVGADNVRAMLGRLIREESLRTYLXTY-AHVYASLSLRPLA 719
            +   + ++N   +  +W L    D++  M+   I E +LRTYL TY +  Y SLSL  LA
Sbjct: 634  QEAFS-VLN---SLDIWRLFKNRDSILDMVKASISEVALRTYLFTYSSSCYKSLSLAELA 689

Query: 720  DMFEL 734
             MF++
Sbjct: 690  KMFDI 694


>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
           to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
          Length = 1280

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 165 GNVKEAHGCLAELMMTGKPKELLAQGLLPQRQHERSKEQEKIEKQRQMPFHMHINLE 335
           GN K +   +A+     +PK         ++QH +S +  K  KQ+ +P HM  ++E
Sbjct: 400 GNRKSSSAKVAKNHPVEEPKSPAPSNSKSEQQHLKSTKASKAPKQKLVPQHMKNSIE 456


>At1g69560.1 68414.m07999 myb family transcription factor (MYB105)
           contains Pfam profile: PF00249: Myb-like DNA-binding
           domain
          Length = 330

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 207 SLTRPNSHELLSRYLGEKHTDLN*PLSDYTKSVY*DQSVVRS 82
           SL   N+  L S Y   +  D+N  LSDY+     D +V RS
Sbjct: 55  SLNIDNAQHLRSYYTSHREEDMNPNLSDYSNCNKKDTTVYRS 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,404,104
Number of Sequences: 28952
Number of extensions: 330065
Number of successful extensions: 792
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)