Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D14
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    31   0.16 
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    29   1.1  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    27   4.4  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   5.9  

>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +3

Query: 216 DIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLGKKGIIP 395
           D G+E +E NRR+    +FS     S ++S     H TL    D  +  V++ G+ G +P
Sbjct: 494 DSGIEASESNRRKSD--IFSFSGRNSFSVSRPSSSHSTLSYANDSASSAVNVAGETGSLP 551

Query: 396 GIK 404
            ++
Sbjct: 552 PLR 554


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 26/104 (25%), Positives = 33/104 (31%), Gaps = 5/104 (4%)
 Frame = +2

Query: 350 WNPSGLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQVAL 529
           +NP  LP    G  P H       P    G         RP             +     
Sbjct: 112 YNPHYLPVNSNGSSPSHTSSLDSIPGYASGSGPFKTPY-RPVAVSESSSRSSFSMGSSEF 170

Query: 530 RAEDWPQHPLVTKL-----SRKTPMFSPATPPSVRANASCQLSS 646
            +  W Q P+ + L     S+    FSPA+ PS     S  LSS
Sbjct: 171 ASSTWSQSPMQSSLYVSPSSQPLDRFSPASFPSKETLTSSSLSS 214


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +2

Query: 107 PELQEELKKIAQAIVAPAKGILAADESTGYNGQAFAGHRRGEHRGEPSSLSPTAIQL*RC 286
           PEL  ++++IAQ    P    LA+   T  N  A A   +  +  E  +L     +L   
Sbjct: 297 PELIPDVERIAQTAAMPEVRALASHALTTLNKAAAAQAAKAANNSEKQALDSACKELREA 356

Query: 287 ALR 295
            L+
Sbjct: 357 VLK 359


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 560 VTKLSRKTPMFSPATP-PSVRANASCQLSSPEVLP 661
           VT  S   P FSPATP P+  AN    +++  + P
Sbjct: 204 VTPQSTLPPGFSPATPAPTSAANTPATIAATSIPP 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,383,133
Number of Sequences: 5004
Number of extensions: 72766
Number of successful extensions: 205
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)