Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_D14
(850 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0) 189 3e-48
SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0) 189 3e-48
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 37 0.018
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 37 0.018
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32) 33 0.29
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_34292| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_50707| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) 31 1.6
SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_31556| Best HMM Match : rve (HMM E-Value=4.7e-30) 30 2.7
SB_59448| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2) 29 4.8
SB_42022| Best HMM Match : TPR_2 (HMM E-Value=0.015) 29 4.8
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 29 4.8
SB_786| Best HMM Match : EGF (HMM E-Value=0) 29 4.8
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_55789| Best HMM Match : ERG2_Sigma1R (HMM E-Value=3.6e-10) 29 6.3
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 29 6.3
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 29 6.3
SB_36428| Best HMM Match : MutS_V (HMM E-Value=2.1e-33) 28 8.3
SB_31380| Best HMM Match : zf-CCHC (HMM E-Value=4.6e-05) 28 8.3
SB_22294| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 28 8.3
SB_48897| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_20450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_10368| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 949
Score = 189 bits (460), Expect = 3e-48
Identities = 93/123 (75%), Positives = 101/123 (82%), Gaps = 1/123 (0%)
Frame = +3
Query: 195 TMGKRLQDIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLL 374
TMGKRL +IGVENTEENRR YRQLLF+S +S ISGVILFHET+YQKADDGTP V LL
Sbjct: 36 TMGKRLANIGVENTEENRRLYRQLLFTSGKEMSNAISGVILFHETVYQKADDGTPFVRLL 95
Query: 375 GKKGIIPGIKVDKGVVPLFGSE-DECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRN 551
+GIIPGIKVDKGVV L G++ E TTQGLD L +RCAQYKKDGC FAKWRCVLKI
Sbjct: 96 RDQGIIPGIKVDKGVVVLAGTDAGETTTQGLDGLGERCAQYKKDGCDFAKWRCVLKITDY 155
Query: 552 TPS 560
TPS
Sbjct: 156 TPS 158
Score = 72.9 bits (171), Expect = 3e-13
Identities = 33/51 (64%), Positives = 38/51 (74%)
Frame = +2
Query: 623 NASCQLSSPEVLPDGEHDLDRXQKVTEVVLAAVYKALNDHHVYLEGTLLXP 775
N + PEVL DG+H L+R QKVTE VL+A YKAL DHH+YLEGTLL P
Sbjct: 179 NGLVPIVEPEVLCDGDHTLERAQKVTEAVLSATYKALMDHHIYLEGTLLKP 229
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/37 (70%), Positives = 30/37 (81%)
Frame = +2
Query: 104 TPELQEELKKIAQAIVAPAKGILAADESTGYNGQAFA 214
TPEL+ ELK+IA+AIVA KGILAADESTG G+ A
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLA 42
Score = 48.4 bits (110), Expect = 7e-06
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +1
Query: 556 PRYQAIQENANVLARYASICQSQRIVPIVEP 648
P A++ENANVLARYASICQ +VPIVEP
Sbjct: 157 PSELAMKENANVLARYASICQQNGLVPIVEP 187
>SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 304
Score = 189 bits (460), Expect = 3e-48
Identities = 93/123 (75%), Positives = 101/123 (82%), Gaps = 1/123 (0%)
Frame = +3
Query: 195 TMGKRLQDIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLL 374
TMGKRL +IGVENTEENRR YRQLLF+S +S ISGVILFHET+YQKADDGTP V LL
Sbjct: 36 TMGKRLANIGVENTEENRRLYRQLLFTSGKEMSNAISGVILFHETVYQKADDGTPFVRLL 95
Query: 375 GKKGIIPGIKVDKGVVPLFGSE-DECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRN 551
+GIIPGIKVDKGVV L G++ E TTQGLD L +RCAQYKKDGC FAKWRCVLKI
Sbjct: 96 RDQGIIPGIKVDKGVVVLAGTDAGETTTQGLDGLGERCAQYKKDGCDFAKWRCVLKITDY 155
Query: 552 TPS 560
TPS
Sbjct: 156 TPS 158
Score = 72.9 bits (171), Expect = 3e-13
Identities = 33/51 (64%), Positives = 38/51 (74%)
Frame = +2
Query: 623 NASCQLSSPEVLPDGEHDLDRXQKVTEVVLAAVYKALNDHHVYLEGTLLXP 775
N + PEVL DG+H L+R QKVTE VL+A YKAL DHH+YLEGTLL P
Sbjct: 179 NGLVPIVEPEVLCDGDHTLERAQKVTEAVLSATYKALMDHHIYLEGTLLKP 229
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/37 (70%), Positives = 30/37 (81%)
Frame = +2
Query: 104 TPELQEELKKIAQAIVAPAKGILAADESTGYNGQAFA 214
TPEL+ ELK+IA+AIVA KGILAADESTG G+ A
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLA 42
Score = 48.4 bits (110), Expect = 7e-06
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +1
Query: 556 PRYQAIQENANVLARYASICQSQRIVPIVEP 648
P A++ENANVLARYASICQ +VPIVEP
Sbjct: 157 PSELAMKENANVLARYASICQQNGLVPIVEP 187
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 37.1 bits (82), Expect = 0.018
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Frame = +2
Query: 323 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 493
R P G + G P E G P GR + RP +GR H PG P P
Sbjct: 359 RPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGRLPH 418
Query: 494 QEGRLPLRQVALRAE-DWP--QHPLVTKLSRKTPMFSPATPP 610
+ GR P Q E W +H ++ P+F P PP
Sbjct: 419 EPGRPPYEQRRPPHEKSWQAFEHQRISH-EHGGPLFEPGRPP 459
Score = 31.9 bits (69), Expect = 0.68
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +2
Query: 323 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 493
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 324 RPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPY 383
Query: 494 QEGRLP 511
+ GR P
Sbjct: 384 EPGRPP 389
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +2
Query: 323 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 493
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 331 RPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPH 390
Query: 494 QEGRLP 511
+ GR P
Sbjct: 391 EPGRPP 396
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 37.1 bits (82), Expect = 0.018
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Frame = +2
Query: 323 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 493
R P G + G P E G P GR + RP +GR H PG P P
Sbjct: 125 RPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGRLPH 184
Query: 494 QEGRLPLRQVALRAE-DWP--QHPLVTKLSRKTPMFSPATPP 610
+ GR P Q E W +H ++ P+F P PP
Sbjct: 185 EPGRPPYEQRRPPHEKSWQAFEHQRISH-EHGGPLFEPGRPP 225
Score = 31.9 bits (69), Expect = 0.68
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +2
Query: 323 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 493
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 90 RPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPY 149
Query: 494 QEGRLP 511
+ GR P
Sbjct: 150 EPGRPP 155
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +2
Query: 323 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 493
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 97 RPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPH 156
Query: 494 QEGRLP 511
+ GR P
Sbjct: 157 EPGRPP 162
>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
Length = 1074
Score = 33.1 bits (72), Expect = 0.29
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +2
Query: 350 WNPSGLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGR---PRPALRPVQEGRLP 511
W P G+P G P GR G P G + G+ PRP +RP + GR+P
Sbjct: 515 WRPGGIPGRTPGRRPG--GRPGNIPPFVPGLIIPSRRPGKRPGPRPGIRPGRGGRIP 569
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 539 DWPQHPLVTKLSRKTPMFSPATPPSVRANASCQLSSPEVLPDG 667
DWP++ RKTP TPP+ +C L + PDG
Sbjct: 828 DWPRN---VDCDRKTPTPPSPTPPTTTPKPACDLHCQTLNPDG 867
>SB_34292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 868
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +3
Query: 522 WRCVLKIGRNTPSLPSY-PGKRQCS 593
WRC GRN P LPSY R CS
Sbjct: 505 WRCAFDDGRNPPLLPSYNSSSRICS 529
>SB_50707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 30.7 bits (66), Expect = 1.6
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Frame = -2
Query: 681 SRSCSPSGKTSGLDNWHDALALTDGG--VAGENIGVFL-DSLVTRGCCG---------QS 538
+R+C +GK +G D D G V GE G F S +T C ++
Sbjct: 211 TRTCQTNGKWTGTQPTCDPAICGDPGAPVNGEKTGAFTYGSTLTYDCMPGYKLVGDRQRT 270
Query: 537 SARNATWRSGSRPSCTGRSAG 475
NA W +GS+P CT S G
Sbjct: 271 CQANAQW-TGSQPHCTATSCG 290
>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
Length = 851
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 554 PLVTKLSRKTPMFS-PATPPSVRANASCQLSSP 649
PL+T +S TP+ PA PP+ +A LSSP
Sbjct: 252 PLLTTMSLDTPLAEPPAPPPTTPTSAGAPLSSP 284
>SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 300 ISGVILFHETLYQKADDGTPLVSLLGKK 383
+SG ++ +E L+Q DD TPLV +L ++
Sbjct: 103 LSGSVVSNEWLHQLMDDSTPLVQILAER 130
>SB_31556| Best HMM Match : rve (HMM E-Value=4.7e-30)
Length = 322
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 184 IHRXQWASVCRTSAWRTQRRTVVVIANCYSALTLCSPR 297
I R +W S W + + V AN Y ALTLC R
Sbjct: 36 IKRKKW-SYANGKVWSSDGKEVACKANIYDALTLCHTR 72
>SB_59448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 570 YPGKRQCSRPLRLHLS--EPTHRANCRAP 650
Y KR C P R H+S EPTHRA+ ++P
Sbjct: 43 YEAKRGCQHP-REHISDTEPTHRAHPQSP 70
>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
Length = 878
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = +2
Query: 458 GSGRPRPALRPVQEGRLPLRQVALRAEDWPQHPLVTKLSRKTPMFSP---ATPPSVRAN 625
GSG P+ L +E P+ + P+ + + R+ PMF P A PP N
Sbjct: 40 GSGTPKATLGGERESSDPIVPFGFQYYPGPEEQSMFNMERENPMFGPVLRARPPLFSGN 98
>SB_42022| Best HMM Match : TPR_2 (HMM E-Value=0.015)
Length = 205
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +2
Query: 119 EELKKIAQAIVAPAKGILAADESTGYNGQAFAGHRRGEHRGEPSSLSPTAIQL*RCALRE 298
+ + +IAQA + P K ADE A + + R EP S ++L C L E
Sbjct: 35 QSVPRIAQARMVPVKSYKMADEVVDLE---VARQKMRQWREEPLRNSEEVVELGECLLLE 91
Query: 299 H 301
H
Sbjct: 92 H 92
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 575 RKTPMFSPATPPSVRANASCQLSSPEVLPDGEHDL 679
R+T +FS PPS+ A AS L++P + G L
Sbjct: 311 RQTMLFSATIPPSIEAMASRLLNAPVFISAGSPSL 345
>SB_786| Best HMM Match : EGF (HMM E-Value=0)
Length = 1427
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 551 HPLVTKLSRKTPMFSPATPPSVRANASCQLSSPEVLPDGEHDLDRXQK 694
HP+V P++SP PP VR SS + + E LD ++
Sbjct: 851 HPMVQPAYVPNPVYSPGMPPPVRQYQQPSKSSDTIASNLEKILDSFEE 898
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -1
Query: 460 PWVVHSSSDPNSGTTPLSTLMPGMMPFFPSRETRGVPSS 344
PW SG P + LMPGMMP P + GV S
Sbjct: 2764 PWSQDQQGMVRSGM-PGAPLMPGMMPIQPLQRPEGVAPS 2801
>SB_55789| Best HMM Match : ERG2_Sigma1R (HMM E-Value=3.6e-10)
Length = 192
Score = 28.7 bits (61), Expect = 6.3
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 13/85 (15%)
Frame = +2
Query: 362 GLPAGEEGHHPRHQG------RQGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQ- 520
G P G EGH RH QG + A R G PG A E + L +
Sbjct: 37 GTPIGTEGHTGRHTADDYFHILQGEQLAFRAGIEFLQPGGSTSSRAAATAVELQFALYES 96
Query: 521 ------VALRAEDWPQHPLVTKLSR 577
V L+ DW ++P VT+L+R
Sbjct: 97 YYNSLAVVLQRRDW-ENPGVTQLNR 120
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 490 WAQRWARSSRPWVVHSSSDPNSGT 419
WAQ ++ SS PW S + SGT
Sbjct: 5909 WAQNYSSSSSPWAPSSPASVRSGT 5932
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 588 IGVFLDSLVT-RGCCGQSSARNATWRSGSRPSCTGRSAGRGRPDPGW 451
+G+ DS V RGCC +S N W SC+ + + R D GW
Sbjct: 1296 LGINKDSCVRGRGCCWDNSVPNVPWCFYHPSSCSSINP-QLRRDCGW 1341
>SB_36428| Best HMM Match : MutS_V (HMM E-Value=2.1e-33)
Length = 689
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -3
Query: 350 IVSLLVKGLVEQDHTRDVLGEHSVRAE*QLAITTTVLLC 234
+V+LLV G ++ V+G+ SV + ++ I TTVL C
Sbjct: 425 LVALLVFGQCDRQDETGVVGDISVVVDTRVIIDTTVLKC 463
>SB_31380| Best HMM Match : zf-CCHC (HMM E-Value=4.6e-05)
Length = 1082
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +3
Query: 300 ISGVILFHETLYQK----ADDGTPLVSLLGKKGIIPGIKVDK 413
I GV FH+ LY + D PL+S+LG K IP + +
Sbjct: 628 IFGVKKFHQYLYGRKFTLVTDHKPLLSILGPKSAIPTLAASR 669
>SB_22294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 28.3 bits (60), Expect = 8.3
Identities = 25/94 (26%), Positives = 36/94 (38%)
Frame = -2
Query: 741 WSFSALYTAARTTSVTFWXRSRSCSPSGKTSGLDNWHDALALTDGGVAGENIGVFLDSLV 562
W S + T +T W S +C P TSG H L +G + + LDS
Sbjct: 292 WPLSEVLQLTGTIQLTEWGFSEACHP--YTSGRVGQH--LEQNEGWITTPELKDLLDS-- 345
Query: 561 TRGCCGQSSARNATWRSGSRPSCTGRSAGRGRPD 460
G ++AR + G + S +G G D
Sbjct: 346 --GDLAMAAAREVLYSVGKKDSIKFPHSGPGGED 377
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 356 PSGLP-AGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRPVQ--EGRLPLRQ 520
PSG P G+EG P+ G+ RP+ RR + G+P P+ GRL ++Q
Sbjct: 333 PSGAPPTGDEGMAPQ-PGQGQARPSYMNKRRQYPAQGGQPGYGAMPLDGPMGRLTVQQ 389
>SB_48897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 557 LVTKLSRKTP-MFSPATPPSVRANASCQLSSPEVL 658
L+ LS TP + SP TPP + + SC P VL
Sbjct: 33 LIPHLSPCTPPLLSPCTPPHLSPSNSCSPGDPLVL 67
>SB_20450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 573 DSLVTRGCCGQSSARNATWRSGSRPSCTGRSAGRGRPDPGWCIRL 439
D L + CGQSS + +G+ CTG GR P IR+
Sbjct: 72 DFLTSPLSCGQSSKNSPAMLAGAGAVCTGLKNGRLSGPPCLSIRI 116
>SB_10368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Frame = +2
Query: 422 PAVRIGRRMHHPGSGRPRPALRPVQEGRLP-----LRQVALRA-EDWPQHPLVT 565
PA+R M + RP PA+RPV R P L+ + L + E+W +PL+T
Sbjct: 352 PAMRPLPAMRPLPAMRPLPAMRPVPAMRPPPAMYLLQDMPLESKEEWQLYPLLT 405
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,416,341
Number of Sequences: 59808
Number of extensions: 637474
Number of successful extensions: 1791
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1775
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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