Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_D13
(860 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 33 0.39
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 0.63
SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5) 29 3.7
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) 29 4.9
SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_12005| Best HMM Match : OATP (HMM E-Value=1.1e-15) 29 4.9
SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42) 29 4.9
SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_24105| Best HMM Match : Kazal_2 (HMM E-Value=1.6) 29 6.4
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 32.7 bits (71), Expect = 0.39
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 349 GRCSCCSGWPGCACSPGLLQSLYAHPSAARP 441
GRCSC +GW G +C+ Y ARP
Sbjct: 685 GRCSCGTGWTGPSCNASCSAGRYGINCVARP 715
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +1
Query: 349 GRCSCCSGWPGCACSPGLLQSLYAHPSAARPNPGHG 456
G CSC GW G CS SL+ H A N +G
Sbjct: 340 GVCSCSPGWTGPFCSKPCPPSLWGHNCAHPCNCTNG 375
>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2324
Score = 27.1 bits (57), Expect(2) = 0.63
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 376 PGCACSPGLLQSLYAHPSAARPNPGHG 456
PGC+ +P Q+ A+P P+P G
Sbjct: 1095 PGCSTAPTQTQATAANPDTGMPSPRFG 1121
Score = 23.4 bits (48), Expect(2) = 0.63
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 448 GHGTNSVPWSDWTWSMPS-NHKIYN 519
G+GT++ SD TW+ S N +Y+
Sbjct: 1143 GYGTSTAKTSDTTWTARSYNPSVYS 1167
>SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)
Length = 262
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = -2
Query: 478 PTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSS 299
PT GP + L + +T I P H Q+ QNNTN ++ K ++K S STSS
Sbjct: 204 PTIGPKHHQQLAQNITNNRPKTSPTIGPKH-HQQSAQNNTN-NRPKTSRKYMS--ISTSS 259
>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
Length = 300
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Frame = +1
Query: 349 GRCSCCSGWPG--CACSPG 399
G C C GW G C CSPG
Sbjct: 245 GTCQCKPGWTGIDCECSPG 263
>SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 29.1 bits (62), Expect = 4.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 352 RCSCCSGWPGCACSPG 399
RC+C SGW G +C G
Sbjct: 68 RCNCMSGWQGLSCEVG 83
>SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 647 GXRVIVDLXPNYVXPXHTWFXQS-XNXPXPXXDXXXW 754
G ++++D PN+ H WF +S N P + W
Sbjct: 112 GMKLLLDFVPNHTSDQHDWFLESRSNRHNPRREWYIW 148
>SB_12005| Best HMM Match : OATP (HMM E-Value=1.1e-15)
Length = 448
Score = 29.1 bits (62), Expect = 4.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 370 GWPGCACSPGLLQSLYAHPSA 432
G+ GCAC+P ++ + HP+A
Sbjct: 383 GYTGCACTPPMINATRPHPNA 403
>SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)
Length = 618
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 300 EEVLKYADDPFWVNLRWSLF--VLFWVAWLCMLAGAIAVIVRA 422
E +LKY D+ W V F++A LC +AG +AV+ +A
Sbjct: 347 ECLLKYTDNVIGTFKYWFFIHSVFFFLAILCSIAGWVAVVSKA 389
>SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 28.7 bits (61), Expect = 6.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 349 GRCSCCSGWPGCACS 393
GRC C GW G ACS
Sbjct: 374 GRCDCKPGWYGSACS 388
>SB_24105| Best HMM Match : Kazal_2 (HMM E-Value=1.6)
Length = 361
Score = 28.7 bits (61), Expect = 6.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 370 GWPGCACSPGLLQSLYAHPSA 432
G+ GCAC+P ++ + HP+A
Sbjct: 51 GYTGCACTPPMINATGPHPNA 71
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -1
Query: 506 WFDGIDQVQSDQGTEFVPCPGFGRAALGCAYNDCNSPGEHAQPGHPEQHEQRPTQVHPEG 327
W +G Q+D T+F P GR +Y++ P +QP E +V P
Sbjct: 1176 WIEGWRTYQTDDSTQFTESPTAGRCQR--SYSEF-YPTTFSQPSSRESRSDMRVEV-PSA 1231
Query: 326 IVSILQ 309
+VS L+
Sbjct: 1232 LVSALK 1237
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,773,809
Number of Sequences: 59808
Number of extensions: 462289
Number of successful extensions: 1585
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1582
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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