Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D12
         (858 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.3  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   3.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   3.1  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   5.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 124  NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 246
            N+I  + W +  D  G     AYHGD  +  E I    ++A
Sbjct: 911  NRIRNQRWIVNRDTSGATGPFAYHGDQWVGFEDIKSVRDKA 951



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 673  QTKHTASTTRLYTTSASAL 729
            QTK T STT   TT+ S L
Sbjct: 1184 QTKTTTSTTTRPTTTVSQL 1202


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 676 TKHTASTTRLYTTSASALSNCP 741
           +K + STT   TT++SAL++ P
Sbjct: 4   SKFSPSTTTTTTTTSSALNSTP 25


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 676 TKHTASTTRLYTTSASALSNCP 741
           +K + STT   TT++SAL++ P
Sbjct: 4   SKFSPSTTTTTTTTSSALNSTP 25


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 345 RTEDLSERSGADRVHGAGLQVDEDGAG 265
           +  DLS R+G+   H   L + + G G
Sbjct: 196 KARDLSPRNGSPTDHSPVLNLSKSGGG 222


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,758
Number of Sequences: 336
Number of extensions: 4247
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23763101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)