Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_D12
(858 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 209 4e-55
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 119 6e-28
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 115 8e-27
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 110 3e-25
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 3.4
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 27 3.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.5
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 4.5
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 26 6.0
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 26 6.0
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 6.0
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 7.9
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 209 bits (510), Expect = 4e-55
Identities = 111/237 (46%), Positives = 136/237 (57%), Gaps = 1/237 (0%)
Frame = +1
Query: 85 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 264
MREIVH+QAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 265 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLXCS 444
PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VL
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 445 PQRIRILRLPTGASNLHIPSVAAPGPVWAPSSSQRSVKSTPTES*THTQ*SPRPK-YQTL 621
+ G H G + + P +P PK T+
Sbjct: 121 RREAEACDALQGFQLTHSLG-GGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTV 179
Query: 622 SSNHTMRLSQFTS*LKTQTKHTASTTRLYTTSASALSNCPHPLTGDLNHLVSLTMSG 792
+ LS + L + A+ L P DLNHLVS M+G
Sbjct: 180 VEPYNATLSMHQLVENSDETFCIDNEALSSIFANTL-KIKSPSYDDLNHLVSAVMAG 235
Score = 116 bits (278), Expect = 6e-27
Identities = 62/119 (52%), Positives = 75/119 (63%)
Frame = +3
Query: 471 AYRGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLS 650
A +GFQ KIREEYPDR+M T+SV P+PK SDTVVEPYNATLS
Sbjct: 129 ALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLS 188
Query: 651 VHQLVENTDETYCIDNEALYDICFRTLKLSTPTYG*P*PLSFPHNVWVSPLAFRFPGSV 827
+HQLVEN+DET+CIDNEAL I TLK+ +P+Y L V+ +FRFPG +
Sbjct: 189 MHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVT-TSFRFPGEL 246
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 119 bits (286), Expect = 6e-28
Identities = 54/118 (45%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = +1
Query: 85 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 258
MREI+ + GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 259 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 432
YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEV 118
Score = 68.9 bits (161), Expect = 9e-13
Identities = 29/69 (42%), Positives = 45/69 (65%)
Frame = +3
Query: 546 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 725
++ EY + +SV P+P+VS +VVEPYN+ L+ H ++ D T+ +DNE+ YDIC R
Sbjct: 156 RLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRR 215
Query: 726 TLKLSTPTY 752
L + P+Y
Sbjct: 216 NLDIERPSY 224
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 115 bits (277), Expect = 8e-27
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 6/123 (4%)
Frame = +1
Query: 85 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 246
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 247 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 426
GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 427 SVL 435
SVL
Sbjct: 121 SVL 123
Score = 75.4 bits (177), Expect = 1e-14
Identities = 32/69 (46%), Positives = 47/69 (68%)
Frame = +3
Query: 546 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 725
++ EY + +SV P+P+VS +VVEPYN+ L+ H ++N+D T+ +DNEA YDIC R
Sbjct: 160 RLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRR 219
Query: 726 TLKLSTPTY 752
L + PTY
Sbjct: 220 NLDIERPTY 228
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 110 bits (264), Expect = 3e-25
Identities = 47/118 (39%), Positives = 79/118 (66%), Gaps = 2/118 (1%)
Frame = +1
Query: 88 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 267
REI+ LQAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 268 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVL 435
RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119
Score = 60.1 bits (139), Expect = 4e-10
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +3
Query: 546 KIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICF 722
++ + YP +I+ TYSV P S VSD VV+PYN+ L++ +L N D +DN AL I
Sbjct: 156 RLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAA 215
Query: 723 RTLKLSTPTY 752
L PT+
Sbjct: 216 DRLHTQNPTF 225
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 124 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 225
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 424 DSVLXCSPQRIRILRLPTGASNLHIPSVAAPGPVWAPSSSQRSVKSTPTES 576
+S +P + ++ P A+N+H+ SVAA PS+ V +T T S
Sbjct: 154 NSTATTTPHKAGVVSNPA-AANVHVLSVAASPNPSTPSNGPAPVSTTATPS 203
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +1
Query: 472 PTGASNLHIPSVAAPGPVWAPSS 540
P+GA + PSVAAP PV APSS
Sbjct: 1155 PSGAPPVPKPSVAAP-PVPAPSS 1176
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 469 LPTGASNLHIPSVAAPGPVWAPSSS 543
+P+GA + PSVAAP PV APS +
Sbjct: 1135 VPSGAPPVPKPSVAAP-PVPAPSGA 1158
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 319 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 420
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 26.2 bits (55), Expect = 6.0
Identities = 20/84 (23%), Positives = 35/84 (41%)
Frame = +1
Query: 553 VKSTPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKHTASTTRLYTTSASALS 732
+ +TP + PR + ++ SS + RL +++ KH S + S A+
Sbjct: 417 ISNTPNLRRFSSSFGPRERKESFSSRN--RLPLVNHPIRSIFKHNVSENPITDHSEHAVY 474
Query: 733 NCPHPLTGDLNHLVSLTMSGCHHL 804
+ DL+ + L S HHL
Sbjct: 475 DSEFASKDDLSGFIQLLDSHAHHL 498
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 68 KITYTK*GKSFIYRPANVV 124
+I+YT G SFIYRP N++
Sbjct: 64 EISYT--GTSFIYRPGNII 80
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 6.0
Identities = 25/104 (24%), Positives = 42/104 (40%)
Frame = +1
Query: 535 SSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKHTASTTRLYTT 714
SS+ S ++TPT S T + +L+SN T + S+ T L +K + + +
Sbjct: 258 SSASTSPRNTPTPSNNGTSINANVT-SSLTSNSTGKTSKTTDLLIAASKKSLPSNSTPSK 316
Query: 715 SASALSNCPHPLTGDLNHLVSLTMSGCHHLPLGSPVQLNP*SQK 846
++ PH D + + PLG LN S +
Sbjct: 317 PNTSFFETPHNNIWDSRDRGAFSAPPAPFFPLGFSPHLNDESSR 360
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 670 TQTKHTASTTRLYTTSASALSNCPHPLT 753
T T +T + TTS S ++CP P T
Sbjct: 166 TSTSCNPATVLIVTTSGSTSTSCPPPTT 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,323,779
Number of Sequences: 5004
Number of extensions: 67611
Number of successful extensions: 224
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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