Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D11
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0162 + 26398252-26399886                                         31   1.1  
12_01_0356 - 2707820-2708395,2708475-2708705,2709071-2709190,270...    30   2.6  
01_03_0131 - 12858377-12858664,12859585-12859975,12863357-128633...    30   2.6  
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578...    29   6.0  
03_06_0587 - 34921535-34922041,34922579-34922689                       29   6.0  
06_03_0143 + 17215975-17216745                                         28   7.9  

>02_05_0162 + 26398252-26399886
          Length = 544

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +2

Query: 533 ASSLHTSRLAPCFKSPPQIDSHYSRAADAHSRDHDQDQKEEPLRVR 670
           AS  H + L      PPQ+    S AA +      QD + EPL VR
Sbjct: 66  ASRAHIANLDRVLGKPPQVPRPASHAAASKQERQQQDGELEPLNVR 111


>12_01_0356 -
           2707820-2708395,2708475-2708705,2709071-2709190,
           2709281-2709401,2711588-2712027
          Length = 495

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -2

Query: 544 QTGGRXREEGR-----SLPMRLLRLKWVGRCSERGGGGEDDVIGW 425
           + GG   EE       +L + LLR   +G  +E GGGGE   IGW
Sbjct: 66  EEGGESEEEEEEWSFLALLLALLRKSLLGCSAEDGGGGEGMEIGW 110


>01_03_0131 -
           12858377-12858664,12859585-12859975,12863357-12863397,
           12864745-12865419
          Length = 464

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 625 PRSRPGPEGRTTQGPYEDDEGMVGDDPAAYLTNE 726
           PRSR  P G T  G  + D G +GD   A L ++
Sbjct: 58  PRSRCSPSGATADGSGDGDSGRLGDGDHAGLGDD 91


>12_02_0017 -
           12357029-12357070,12357434-12357503,12357722-12357852,
           12358836-12358882,12359762-12360044,12360547-12362413,
           12362454-12362665
          Length = 883

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 139 APAQHADDSMDPLDVPQGSTAPQRTARH 222
           AP++HA  S  P   P  ++AP  + RH
Sbjct: 79  APSRHATPSSSPPSTPSSASAPPPSGRH 106


>03_06_0587 - 34921535-34922041,34922579-34922689
          Length = 205

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 650 PSGPGRDRGNERPQLANSGSRFAVG 576
           P GPGRDR  +R    + GSR+  G
Sbjct: 85  PQGPGRDRNGDRDYDRDRGSRYDRG 109


>06_03_0143 + 17215975-17216745
          Length = 256

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 211 CVVEQCFLVVRLEGPCCHQHAGQEHRWAVSACS 113
           C V  C+  VRL  P C   AG+  R    ACS
Sbjct: 202 CDVPFCYCRVRLRRPACAAPAGRAARRLEKACS 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,857,342
Number of Sequences: 37544
Number of extensions: 518316
Number of successful extensions: 1817
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1817
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)