Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_D11
(830 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8) 34 0.16
SB_37750| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_49107| Best HMM Match : Enterotoxin_HS (HMM E-Value=3.7) 29 3.5
SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26) 29 3.5
SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_29777| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37) 29 6.1
SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16) 28 8.1
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_43181| Best HMM Match : rve (HMM E-Value=1e-25) 28 8.1
>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
Length = 361
Score = 33.9 bits (74), Expect = 0.16
Identities = 26/90 (28%), Positives = 36/90 (40%)
Frame = +1
Query: 475 RPTSTLTISSASCDLLPLXGLQSAHLKTSALFQIPTANRLPLFASCGRSFPRSRPGPEGR 654
RPTST T + + Q+A + +A P + P S+PG G+
Sbjct: 33 RPTSTSTKPTTASTKPTSPPSQAARTRNTA----EKPEEKPASSGAASPIPASKPGQPGK 88
Query: 655 TTQGPYEDDEGMVGDDPAAYLTNEAHDAPV 744
D G DDP A L ++ DAPV
Sbjct: 89 KFNINKFDSLGFDEDDPLAGLLSDDEDAPV 118
>SB_37750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 759
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 532 GLQSAHLKTSALFQIPTANRLPLFASCGRSFPRSRPGPEGRTTQGPYED 678
G + L A+F+IPTANR S G+S P S P +T+ +D
Sbjct: 298 GNNAMRLIKDAVFEIPTANRFTPLQS-GQSSPTSAQHPSDNSTRDRSQD 345
>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 969
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -1
Query: 230 SVPCRAVRCGAVLPCGTSRGSML----SSACWAGASMGSL 123
SV CR V+C V+ C S+ L SS WA + GSL
Sbjct: 369 SVACRYVQCVHVVMCAKSKRQRLSRQRSSHSWASCARGSL 408
>SB_49107| Best HMM Match : Enterotoxin_HS (HMM E-Value=3.7)
Length = 254
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/59 (23%), Positives = 23/59 (38%)
Frame = +1
Query: 616 RSFPRSRPGPEGRTTQGPYEDDEGMVGDDPAAYLTNEAHDAPVGHXIASTAEPDATEHS 792
+ +++PGPEG+ DD+ D+ T D + +T E E S
Sbjct: 88 KEISKAKPGPEGKPDSESSSDDQSYKEDEENEDFTTNKKDTQIASACKATKEESTDEIS 146
>SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 383
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 226 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 354
+ H+ GCI TF W P+ E+K++I E C + G
Sbjct: 133 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITECEVCLTHRSG 174
>SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 226 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 354
+ H+ GCI TF W P+ E+K++I E C + G
Sbjct: 330 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITECEVCLTHRSG 371
>SB_29777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 162 QHGPSRRTTRKHCSTTHRPTWDG-TRHD*WLHRAQSSD 272
QH ++ +T +H +T H TW T+HD H D
Sbjct: 92 QHSTTQHSTTQHSTTQHDTTWHSKTQHDTARHSTARHD 129
>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
Length = 1188
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +1
Query: 610 CGRSFPRSRPGPEGRTTQGPYEDDEGMVGDDPAAYLTNEAHDAPVGHXIASTAEP 774
C + F + + + TQGP+ G DP A+ T + A I+ EP
Sbjct: 1056 CEKCFNKYQQKQAQKETQGPFSSRPQGAGHDPRAWGTTTTYSAQAPVHISRQREP 1110
>SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 869
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 175 LDVPQGSTAPQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 354
L VP+ H + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 637 LGVPRALRKELMEKTHSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 694
>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +1
Query: 229 EHVMTNGCIALKAPTF--HWEPQHCGEIKDFICEQ--TRCYYYN 348
+H C+ + A F +W C + ++FICE+ C+ +N
Sbjct: 884 DHSGKEDCVEMMAGYFAGYWNDNFCEQFRNFICEKPFDSCFEFN 927
>SB_43181| Best HMM Match : rve (HMM E-Value=1e-25)
Length = 341
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 226 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 354
+ H+ GCI TF W P+ E+K++I + C ++ G
Sbjct: 133 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHHSG 174
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,131,889
Number of Sequences: 59808
Number of extensions: 556848
Number of successful extensions: 1978
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1973
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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