Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D11
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   2.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   2.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   8.0  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 223 HVGRCVVEQCFLVVRLEGPCC 161
           H+G  ++    L++ L G CC
Sbjct: 57  HIGLAIIYSMLLIMSLVGNCC 77


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 223 HVGRCVVEQCFLVVRLEGPCC 161
           H+G  ++    L++ L G CC
Sbjct: 57  HIGLAIIYSMLLIMSLVGNCC 77


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 138 IDGQSPHVVKSRIKWQTGA 82
           I+  S H  K R++W TGA
Sbjct: 134 IESFSYHKQKLRLRWGTGA 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,551
Number of Sequences: 438
Number of extensions: 4381
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)