Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D11
         (830 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58480.1 68418.m07324 glycosyl hydrolase family 17 protein si...    29   2.9  
At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c...    29   2.9  
At4g29000.1 68417.m04145 tesmin/TSO1-like CXC domain-containing ...    29   5.0  
At4g01090.1 68417.m00147 extra-large G-protein-related contains ...    28   8.7  
At3g27550.1 68416.m03443 group II intron splicing factor CRS1-re...    28   8.7  

>At5g58480.1 68418.m07324 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 476

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 652 FLLVLVVIAGMSVRSSRIVGVDLRWGFE 569
           FLL+L V AG+S+  + +  V + WG E
Sbjct: 6   FLLLLAVTAGLSLTGTTVRAVGINWGTE 33


>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
           contains Pfam PF02138: Beige/BEACH domain; similar to
           LBA isoform gamma (GI:10257405) [Mus musculus]; similar
           to beige-like protein (CDC4L) - Homo sapiens; similar to
           Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
           protein homolog implicated in neuronal membrane traffic
           (AKAP550) (GI:11863541) [Drosophila melanogaster].
          Length = 1928

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 515 TFFPXTASSLHTSRLAPCFKSPPQIDSHYSRAA 613
           +  P T SS+H   L PC ++ P   + YS AA
Sbjct: 323 SLLPLTVSSVHKDNLEPCSRNVPSSLTTYSLAA 355


>At4g29000.1 68417.m04145 tesmin/TSO1-like CXC domain-containing
           protein similar to CXC domain containing TSO1-like
           protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427,
           SP|Q9Y4I5 Tesmin (Metallothionein-like 5,
           testis-specific) {Homo sapiens}; contains Pfam profile
           PF03638: Tesmin/TSO1-like CXC domain
          Length = 603

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 640 GPEGRTTQGPYEDDEGMVGDDPAAYLTNEAHDAPVGHXIASTAEPDATEHS 792
           G   +T+     + E  V D     L + A D P G+  A+  E  AT+H+
Sbjct: 380 GEAAKTSTDKRNEIENRVDDQTETSLASSAQDQPQGNNNAADVEMVATDHN 430


>At4g01090.1 68417.m00147 extra-large G-protein-related contains
           weak similarity to extra-large G-protein [Arabidopsis
           thaliana] gi|3201682|gb|AAC19353
          Length = 714

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
 Frame = +1

Query: 613 GRSFPRSR--PGPEGRTTQGPYEDDEGMVGDDPAAYLTNEAHDAPV 744
           G SFP S   PGP G   + P E D  M G     Y+     D  V
Sbjct: 262 GSSFPSSMGTPGPRGGYARWPSEHDSEMGGAFARGYVKKAVSDTGV 307


>At3g27550.1 68416.m03443 group II intron splicing factor
           CRS1-related contains weak similarity to CRS1 [Zea mays]
           gi|9837550|gb|AAG00595
          Length = 491

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 622 FPRSRPGPEGRTTQGPYEDDEGMVGDDPAAYLTNEAHDAPVGHXIASTAEPDATEHSVHA 801
           F R  P P  R       DD+ +   D   + + +  DAP  + I+S+ + +    +V A
Sbjct: 397 FKRRSPDPRPRPRAQVRSDDDVLSDLDNTMWDSEDEEDAPPANYISSSDDDEDENRTVSA 456

Query: 802 S 804
           S
Sbjct: 457 S 457


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,511,330
Number of Sequences: 28952
Number of extensions: 354804
Number of successful extensions: 1035
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)