Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D10
         (839 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  56   3e-08
SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   7e-05
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       33   0.38 
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   0.61 
SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)                    29   3.6  
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)                   29   4.7  
SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_12005| Best HMM Match : OATP (HMM E-Value=1.1e-15)                  29   4.7  
SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)              29   4.7  
SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_24105| Best HMM Match : Kazal_2 (HMM E-Value=1.6)                   29   6.2  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 11/181 (6%)
 Frame = +2

Query: 248  DAKIELDANKRQFTGMTREEVLKYADDPFWVNLRWSLFVLFWVAWLCMLAGAIAVIVRAP 427
            + K++L+   R     + EEV KY+        R  L V F +  L M+  A+ +I+ AP
Sbjct: 582  EVKVKLEQPSRVPQKPSDEEVAKYS------KTRMVLVVFFGLVILAMIVAAVVIIIVAP 635

Query: 428  KCGPPEPR----TWYELGPLVGLDL------VDAVEPXXXXXXXXXXKTFKVQGVFVQVP 577
            KC   + R    +W E   +  +        +  +            K   +  VF +  
Sbjct: 636  KCAKAKVRDMDKSWLENEVVYKISAQQFNKNLTGIIDKLGYLENLGVKVLSIGAVFSEED 695

Query: 578  TYEVLDKRDTLDEFKILFNKIKKIGIRVIVDLIPNYVFTNHTWFVQSE-NSTEPYTDYFI 754
              +V +    +++F+ L  K     +RVIVD +PN+    + WF +S  N T    ++++
Sbjct: 696  LQDVNNALGKMEDFQNLLKKAHDRKMRVIVDFVPNHTSKKNKWFEESSVNKTNSKRNWYV 755

Query: 755  W 757
            W
Sbjct: 756  W 756


>SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +2

Query: 605 TLDEFKILFNKIKKIGIRVIVDLIPNYVFTNHTWFVQS-ENSTEPYTDYFIW 757
           T+++F+ L   I   G+++++D +PN+    H WF++S  N   P  +++IW
Sbjct: 97  TMEDFESLLQDIHSRGMKLLLDFVPNHTSDQHDWFLESRSNRHNPRREWYIW 148


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 351 GRCSCCSGWPGCACSPGLLQSLYAHPSAARP 443
           GRCSC +GW G +C+       Y     ARP
Sbjct: 685 GRCSCGTGWTGPSCNASCSAGRYGINCVARP 715



 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 351 GRCSCCSGWPGCACSPGLLQSLYAHPSAARPNPGHG 458
           G CSC  GW G  CS     SL+ H  A   N  +G
Sbjct: 340 GVCSCSPGWTGPFCSKPCPPSLWGHNCAHPCNCTNG 375


>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2324

 Score = 27.1 bits (57), Expect(2) = 0.61
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 378  PGCACSPGLLQSLYAHPSAARPNPGHG 458
            PGC+ +P   Q+  A+P    P+P  G
Sbjct: 1095 PGCSTAPTQTQATAANPDTGMPSPRFG 1121



 Score = 23.4 bits (48), Expect(2) = 0.61
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 450  GHGTNSVPWSDWTWSMPS-NHKIYN 521
            G+GT++   SD TW+  S N  +Y+
Sbjct: 1143 GYGTSTAKTSDTTWTARSYNPSVYS 1167


>SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)
          Length = 262

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 22/60 (36%), Positives = 30/60 (50%)
 Frame = -3

Query: 480 PTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSS 301
           PT GP  +  L     +   +T   I P   H Q+ QNNTN ++ K ++K  S   STSS
Sbjct: 204 PTIGPKHHQQLAQNITNNRPKTSPTIGPKH-HQQSAQNNTN-NRPKTSRKYMS--ISTSS 259


>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
          Length = 300

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
 Frame = +3

Query: 351 GRCSCCSGWPG--CACSPG 401
           G C C  GW G  C CSPG
Sbjct: 245 GTCQCKPGWTGIDCECSPG 263


>SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 354 RCSCCSGWPGCACSPG 401
           RC+C SGW G +C  G
Sbjct: 68  RCNCMSGWQGLSCEVG 83


>SB_12005| Best HMM Match : OATP (HMM E-Value=1.1e-15)
          Length = 448

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 372 GWPGCACSPGLLQSLYAHPSA 434
           G+ GCAC+P ++ +   HP+A
Sbjct: 383 GYTGCACTPPMINATRPHPNA 403


>SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)
          Length = 618

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 302 EEVLKYADDPFWVNLRWSLF--VLFWVAWLCMLAGAIAVIVRA 424
           E +LKY D+       W     V F++A LC +AG +AV+ +A
Sbjct: 347 ECLLKYTDNVIGTFKYWFFIHSVFFFLAILCSIAGWVAVVSKA 389


>SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 351 GRCSCCSGWPGCACS 395
           GRC C  GW G ACS
Sbjct: 374 GRCDCKPGWYGSACS 388


>SB_24105| Best HMM Match : Kazal_2 (HMM E-Value=1.6)
          Length = 361

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 372 GWPGCACSPGLLQSLYAHPSA 434
           G+ GCAC+P ++ +   HP+A
Sbjct: 51  GYTGCACTPPMINATGPHPNA 71


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -2

Query: 508  WFDGIDQVQSDQGTEFVPCPGFGRAALGCAYNDCNSPGEHAQPGHPEQHEQRPTQVHPEG 329
            W +G    Q+D  T+F   P  GR     +Y++   P   +QP   E       +V P  
Sbjct: 1176 WIEGWRTYQTDDSTQFTESPTAGRCQR--SYSEF-YPTTFSQPSSRESRSDMRVEV-PSA 1231

Query: 328  IVSILQ 311
            +VS L+
Sbjct: 1232 LVSALK 1237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,326,853
Number of Sequences: 59808
Number of extensions: 543003
Number of successful extensions: 1876
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1872
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)