Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D05
         (833 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3709| Best HMM Match : No HMM Matches (HMM E-Value=.)               79   4e-15
SB_7955| Best HMM Match : SH3_1 (HMM E-Value=0.77)                     30   2.7  
SB_36664| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  

>SB_3709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 36/103 (34%), Positives = 59/103 (57%)
 Frame = +3

Query: 267 DREPKPWAEYKPYVTFHAVVDLLYNVMFKSVSAATVEQWPVKLAEYIRHNDEANAKAAER 446
           D    P+  Y+P V +   +D L ++  K++  ++   WP  +AE IR+NDE   K+ ++
Sbjct: 78  DTSVLPYTVYRPAVIYFFFLDQLQSIFKKNLVISSGTSWPQAMAENIRNNDETILKSCDK 137

Query: 447 VVTTLTEELLPCASFAEFCDAAGLLRDLPDPDAFIRATIEEMP 575
           ++T+  E+LLP  SF E CD AG+L  L + D F+   I  +P
Sbjct: 138 ILTSYQEDLLPAESFMELCDVAGVLDQLDNVDTFLSDIISGLP 180


>SB_7955| Best HMM Match : SH3_1 (HMM E-Value=0.77)
          Length = 1002

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 26/88 (29%), Positives = 39/88 (44%)
 Frame = +3

Query: 354 SVSAATVEQWPVKLAEYIRHNDEANAKAAERVVTTLTEELLPCASFAEFCDAAGLLRDLP 533
           S S+ T  +WP      +   DE+  K A R  +T+ EE+    S  +   +A   + +P
Sbjct: 748 SQSSVTRPEWPAPPPP-LEFLDESTCKPAARNASTMNEEITAARSNLKSITSA---KSMP 803

Query: 534 DPDAFIRATIEEMP*GRPRVTQCHNGCM 617
           D      A+IE  P  R R   C +G M
Sbjct: 804 D-----IASIERPPSLRQRKKSCGDGLM 826


>SB_36664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 336 YNVMFKSVSAATVEQWPVKLAEYIRHNDEANAKAAER 446
           YN  F+   AA ++ +P  ++  +RH DE   +A ++
Sbjct: 272 YNFRFEEPDAAFIKTYPRTISASVRHKDERRKEARKQ 308


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,880,730
Number of Sequences: 59808
Number of extensions: 266229
Number of successful extensions: 661
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)