Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D04
         (850 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.51 
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  

>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +2

Query: 674 PXGWWLCWTXLNESYAGV---GVXIHPQVVMTGAHIAYKYARGNLRAKAG 814
           P G W     L  +Y G    G  +HPQ V+T AH  Y+    + + + G
Sbjct: 147 PPGAWPWQAMLRSNYGGQFCGGTLVHPQWVITAAHCVYRRGPNDFKIRMG 196


>SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 768

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 470 GWGVLDVRFGEEDCQESVEICCTNPITEPVPKPQPDPSKLKG 595
           GW + DV+F   D  E   +    P+ EP P+P P P    G
Sbjct: 312 GWTLEDVQFELIDMNEEKPV--DEPVAEPKPEPPPQPDSAPG 351


>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1726

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 503  EDCQ-ESVEICCTNPITEPVPKPQPDPSKLKGCGYRNP 613
            + C+  S +I  T P T PV +P   PS+   C   NP
Sbjct: 1173 QSCKPSSSQINATEPSTHPVSQPGSSPSQTSTCSQVNP 1210


>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +2

Query: 536 TNPITEPVPKPQ--PDPSKLKGCGY 604
           ++P+T P+PKPQ  P PSK  G G+
Sbjct: 215 SHPLTRPIPKPQRPPQPSK-SGSGW 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,456,351
Number of Sequences: 59808
Number of extensions: 523154
Number of successful extensions: 1848
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1843
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)