Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D02
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...   115   1e-26
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    28   1.9  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   3.3  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    27   4.4  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.8  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   5.8  
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    26   5.8  

>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score =  115 bits (276), Expect = 1e-26
 Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
 Frame = +2

Query: 272 QMELLIMRIQAEFCRALEKEEDKEAKFTVDRWTRKEGGGGITCVLQDGRVFEKAGVNISV 451
           QME LI+ +Q E    LE  + +  KF  D+WT+ EGG GI+CV+QDG VFEK GVN S+
Sbjct: 12  QMEKLILDVQQEIVAGLEAVDGQ--KFFQDKWTKGEGGYGISCVIQDGNVFEKGGVNTSI 69

Query: 452 VSGKLPPAAIQQMRSRGKNLQNA--ELPFFAAGVSAVIHPRNPHGP 583
           V GKL   A+Q+MR+  + +     ELPFFAAG+S VIHPRNP  P
Sbjct: 70  VQGKLNQDAVQRMRANHEGIDRTAKELPFFAAGISMVIHPRNPMAP 115



 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 22/36 (61%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = +3

Query: 573 PMVPTIHFNYRYFEVQDKNGVQ-WWFGGGTDLTPXL 677
           PM PT H NYRYFE+ + +G + WWFGGG DLTP +
Sbjct: 112 PMAPTTHLNYRYFELVNSDGKKIWWFGGGADLTPSI 147



 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 679 LNEDDALHFHLTLKHACDDHDSSYYARFXKWCDDXFYXPTXVKGXGXRD-FFDDL 840
           L E+D  HFH   K ACD HD ++Y RF KW D+ F      +  G    FFDDL
Sbjct: 148 LFEEDGKHFHKLHKEACDRHDPTFYPRFKKWADEYFLIKHRKETRGIGGIFFDDL 202


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 140 TGIVAYNQYQSKAKMKEIMQLKNYMANPITPVEQLEQNKDDMKTQMEL 283
           +G  AYN     +K+K  M   N M  P TP  +  +NK+ +  ++ L
Sbjct: 705 SGASAYNSPIQTSKLKN-MNFFNTMHMPSTPAHKRPENKNQIDVEINL 751


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 450 TDIFTPAFSKTLPSCRTQVIP 388
           TD+F PAF KTL    + V P
Sbjct: 202 TDLFPPAFCKTLSKLHSHVTP 222


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 185 KEIMQLKNYMANPITPVEQLEQNKDDMKTQMEL 283
           KE+ + +  + N    VE++  N++DMK  +EL
Sbjct: 110 KEVRESQQSLENEFDKVEKIIVNEEDMKKTLEL 142


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
 Frame = -3

Query: 295 PHDE*FHLCLHIIFVLL*LFNWCDWVCH-------IVLKLHYFFHFCFTLVLIVSYNTCX 137
           P D  + L +    + + +F W  W C+       + +    FF F   +V  VSYN   
Sbjct: 412 PEDRLYPLFIGCFLLPISMF-WFAWTCYPHHIHWIVPIIASAFFGFSLLIVFFVSYNYII 470

Query: 136 QGQQH 122
              QH
Sbjct: 471 DSYQH 475


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 634 TPFLSWTSKYL*L-KWMVGTMGVPWV 560
           +PF+  ++  L L  W+VG +G+PW+
Sbjct: 69  SPFIGCSNVSLRLINWLVGVIGLPWL 94


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +2

Query: 401 VLQDGRVFEKAGVNISVVSGKLPPAAIQQ--MRSRGKNLQ-NAELPFFAAGVSAVIH 562
           VL+DG       +  SV  GKLP   IQQ  +  +G   Q   E  FFAA  +++IH
Sbjct: 289 VLKDGSTLSAKKIVSSVDEGKLPHQQIQQRYLLVKGDCQQLFQEDGFFAALDASLIH 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,692
Number of Sequences: 5004
Number of extensions: 64294
Number of successful extensions: 203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)