Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_D02
(846 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1114 + 30995816-30996229,30997054-30997129,30997493-309975... 114 7e-26
08_01_0901 - 8873905-8874076,8874674-8874786,8875388-8875522,887... 31 1.5
11_06_0291 + 22008412-22012284 30 2.0
08_02_0128 - 12848227-12848619,12848699-12848827,12849108-128492... 30 2.0
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820... 29 3.5
06_03_0689 + 23538367-23538474,23538583-23540557,23540647-23541092 29 3.5
03_03_0105 + 14491198-14493636,14494793-14494957,14495647-144957... 29 6.2
04_04_0012 + 22145111-22146388 28 8.1
03_05_0106 + 20880069-20881001 28 8.1
>04_04_1114 +
30995816-30996229,30997054-30997129,30997493-30997587,
30997729-30997812,30998094-30998181,30998485-30998609,
30998687-30998785,31000089-31000190,31001570-31001680
Length = 397
Score = 114 bits (275), Expect = 7e-26
Identities = 57/114 (50%), Positives = 77/114 (67%), Gaps = 7/114 (6%)
Frame = +2
Query: 263 MKTQMELLIMRIQAEFCRALEKEEDKEAKFTVDRWTRKEGGGGITCVLQDGRVFEKAGVN 442
++ + E +I R+Q E C ALE+ + A+F D W+R GGGGI+ VLQDGRVFEKAGVN
Sbjct: 35 VRERFEAMIRRVQGEVCAALEEADGSGARFVEDVWSRPGGGGGISRVLQDGRVFEKAGVN 94
Query: 443 ISVVSGKLPPAAIQQMRSR-GKNLQNAE------LPFFAAGVSAVIHPRNPHGP 583
+SVV G +PP A + + GKN A+ +PFFAAG+S+V+HP+NP P
Sbjct: 95 VSVVYGVMPPDAYRAAKGEAGKNGAAADGPKAGPVPFFAAGISSVLHPKNPFAP 148
Score = 61.7 bits (143), Expect = 7e-10
Identities = 28/56 (50%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 676 YLNEDDALHFHLTLKHACDDHDSSYYARFXKWCDDXFYXPTXVKGXGXRD-FFDDL 840
Y+ E+D HFH K ACD D S+Y RF KWCDD FY + G FFDDL
Sbjct: 184 YIIEEDVKHFHSVQKQACDKFDPSFYPRFKKWCDDYFYIKHRNERRGLGGIFFDDL 239
Score = 56.8 bits (131), Expect = 2e-08
Identities = 25/38 (65%), Positives = 27/38 (71%), Gaps = 5/38 (13%)
Frame = +3
Query: 573 PMVPTIHFNYRYFEV---QDKNGV--QWWFGGGTDLTP 671
P PT+HFNYRYFE +D G QWWFGGGTDLTP
Sbjct: 145 PFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTP 182
>08_01_0901 -
8873905-8874076,8874674-8874786,8875388-8875522,
8875661-8875792,8876136-8876301,8877154-8877248,
8878983-8879104,8879283-8879403,8879556-8879633,
8879730-8879991,8880196-8880366,8881070-8881710
Length = 735
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 332 EDKEAKFTVDRWTRKEGGGG 391
ED+E ++ VDRW +E GGG
Sbjct: 168 EDEEVRWLVDRWLAEEDGGG 187
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 287 IMRIQAEFCRALEKEEDKEAKFTVDRWTRKEGGGG 391
IM+I + + +E +E+ + +V++ T K+GGGG
Sbjct: 374 IMKIARKLKKHMEADEELNEQISVEKRTTKQGGGG 408
>08_02_0128 -
12848227-12848619,12848699-12848827,12849108-12849279,
12849336-12849488,12850017-12850271,12850846-12851000,
12853319-12853456,12853545-12853715,12853878-12854063,
12854169-12854290,12855617-12855752,12856108-12856203,
12856294-12856356,12856846-12856993,12857324-12857514,
12857916-12857989,12858039-12858171,12858299-12858460,
12861649-12861745,12861866-12861962,12863994-12864141
Length = 1072
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 724 ACDDHDSSYYARFXKWCDDXF 786
ACD H S YYARF +C + +
Sbjct: 847 ACDFHFSEYYARFKSYCCEAY 867
>07_03_0943 -
22778877-22780970,22781376-22781480,22781481-22782059,
22782149-22782187,22782340-22782372
Length = 949
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 451 CLRETSSSCHSADAEQRQESTKRRAP 528
CL + ++SC+ +EQR++ST+ R P
Sbjct: 770 CLPDINASCNGLLSEQRRQSTRSRPP 795
>06_03_0689 + 23538367-23538474,23538583-23540557,23540647-23541092
Length = 842
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 573 PMVPTIHFNYRYFEVQDKNGVQWWFGGGTD 662
P PTIH ++ +V G +WW GG D
Sbjct: 145 PHGPTIHVRLQFKDVAADGGGKWWGGGVGD 174
>03_03_0105 + 14491198-14493636,14494793-14494957,14495647-14495760,
14496223-14496487,14497164-14497237,14497851-14497928
Length = 1044
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +1
Query: 19 FLEKMSFNILFRSFQTLSYVGTYKKIKNRPLRLYCAAVLGHRYCS 153
FL+K FN + + YVGT I P AVL HR CS
Sbjct: 903 FLKKPKFNDILLEMFRIDYVGTSSYISCNP------AVLHHRLCS 941
>04_04_0012 + 22145111-22146388
Length = 425
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -2
Query: 524 ALRFVDSCLCSASAEWQLEEVSRRQL--IYSLLLSQRLCRLVE 402
+L++ ++ L ++ + + + R L +Y LL Q LCRL+E
Sbjct: 300 SLKYFETALRDYKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIE 342
>03_05_0106 + 20880069-20881001
Length = 310
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -2
Query: 524 ALRFVDSCLCSASAEWQLEEVSRRQL--IYSLLLSQRLCRLVE 402
+L++ ++ L ++ + + + R L +Y LL Q LCRL+E
Sbjct: 185 SLKYFETALRDYKSQLEEDPIVHRHLSSLYDALLEQNLCRLIE 227
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,717,620
Number of Sequences: 37544
Number of extensions: 450778
Number of successful extensions: 1409
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -