Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_D02
(846 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33974| Best HMM Match : Coprogen_oxidas (HMM E-Value=0) 83 2e-22
SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048) 33 0.39
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24) 31 0.89
SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 31 0.89
SB_39893| Best HMM Match : Retrotrans_gag (HMM E-Value=0.21) 31 0.89
SB_39683| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 31 0.89
SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36) 31 0.89
SB_20012| Best HMM Match : Retrotrans_gag (HMM E-Value=0.005) 31 0.89
SB_52164| Best HMM Match : Retrotrans_gag (HMM E-Value=0.21) 31 0.89
SB_52157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_29035| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 31 0.89
SB_24279| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_22197| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 31 0.89
SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 31 0.89
SB_15963| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 31 0.89
SB_15492| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 31 0.89
SB_15389| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 31 0.89
SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36) 31 0.89
SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18) 31 0.89
SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052) 31 1.2
SB_31142| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_50371| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12) 31 1.6
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 31 1.6
SB_40058| Best HMM Match : rve (HMM E-Value=5.2e-36) 30 2.7
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 30 2.7
SB_19747| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0) 29 4.7
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098) 29 6.3
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_33974| Best HMM Match : Coprogen_oxidas (HMM E-Value=0)
Length = 539
Score = 83.4 bits (197), Expect(2) = 2e-22
Identities = 37/57 (64%), Positives = 45/57 (78%)
Frame = +2
Query: 413 GRVFEKAGVNISVVSGKLPPAAIQQMRSRGKNLQNAELPFFAAGVSAVIHPRNPHGP 583
G+VFEKAGVN+SVV G L A QQM+SRGK + +LPFFA G+S+VIHPRNP+ P
Sbjct: 284 GKVFEKAGVNVSVVYGTLAAKAAQQMKSRGKGFKGEDLPFFACGISSVIHPRNPYVP 340
Score = 72.1 bits (169), Expect = 5e-13
Identities = 31/57 (54%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +1
Query: 673 YYLNEDDALHFHLTLKHACDDHDSSYYARFXKWCDDXFYXPTXVKGXGXRD-FFDDL 840
YYLNE D +HFH LK CD HD+SYY RF WCD F+ P + G FFDDL
Sbjct: 371 YYLNEQDVMHFHGVLKRVCDKHDASYYQRFKSWCDKYFFIPHRGECRGVGGIFFDDL 427
Score = 58.8 bits (136), Expect = 5e-09
Identities = 25/34 (73%), Positives = 28/34 (82%), Gaps = 1/34 (2%)
Frame = +3
Query: 573 PMVPTIHFNYRYFEVQDKNGVQW-WFGGGTDLTP 671
P VPT+HFNYRYFEV D +G + WFGGGTDLTP
Sbjct: 337 PYVPTVHFNYRYFEVTDIDGQKHAWFGGGTDLTP 370
Score = 40.7 bits (91), Expect(2) = 2e-22
Identities = 14/35 (40%), Positives = 27/35 (77%)
Frame = +2
Query: 203 KNYMANPITPVEQLEQNKDDMKTQMELLIMRIQAE 307
+ +M P+T ++ LE+NKD M+T+ME++I++ Q +
Sbjct: 251 QTFMGKPLTDIKTLEKNKDSMRTKMEVMILKAQGK 285
>SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)
Length = 763
Score = 32.7 bits (71), Expect = 0.39
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = -1
Query: 636 GPHSYPGPQSIYS*SGWWGPWGFLGWMTALTPAAKNGS--SAFCRFLPLLRIC*MAAGGS 463
GP PGPQ + G GP G +G + P GS S+ C+++ + AAG
Sbjct: 177 GPQGPPGPQGLPGPQGVPGPAGDIGPSGSSGPQGPPGSFNSSLCQYVKKSSVA-TAAGDG 235
Query: 462 FPETTDIFTPAFSKTLPSC 406
+ P + + +P C
Sbjct: 236 ADSDIVVTEPTWFRKVPLC 254
>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
Length = 2160
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 88 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 133
>SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 998
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 88 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 133
>SB_39893| Best HMM Match : Retrotrans_gag (HMM E-Value=0.21)
Length = 137
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 88 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 133
>SB_39683| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 579
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 52 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 97
>SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)
Length = 1022
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 88 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 133
>SB_20012| Best HMM Match : Retrotrans_gag (HMM E-Value=0.005)
Length = 202
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 107 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 152
>SB_52164| Best HMM Match : Retrotrans_gag (HMM E-Value=0.21)
Length = 137
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 88 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 133
>SB_52157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 88 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 133
>SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 272 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 317
>SB_29035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 26 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 71
>SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 538
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 209 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 254
>SB_24279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 88 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 133
>SB_22197| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 528
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 88 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 133
>SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 870
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 88 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 133
>SB_15963| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 434
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 73 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 118
>SB_15492| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 580
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 88 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 133
>SB_15389| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 462
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 208 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 253
>SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36)
Length = 1677
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 88 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 133
>SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18)
Length = 1046
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQESTKRRA 525
HL +TRRQ ES EY+ L+ S C S A Q E + R A
Sbjct: 433 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDA 478
>SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)
Length = 649
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = +2
Query: 173 KAKMKEIMQLKNYMANPITPVEQLEQNKDDMKTQMELLIMRIQAEFCRALEKEEDKEAKF 352
K ++K++ + KN + + VE L ++ Q ELL R + C+ALE E+ E
Sbjct: 429 KLEIKKLRREKNILTKNVANVEDLR--REVYHHQRELLRERTR---CKALE--EELENPM 481
Query: 353 TVDRWTRKEG 382
+ RW + EG
Sbjct: 482 NIHRWRKLEG 491
>SB_31142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 745
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 236 EQLEQNKDDMKTQMELLIMRIQAEFCRALEKEEDKEAK 349
E +EQ D++ QM L MRI+ E ++K+E +E K
Sbjct: 170 EHMEQLDDELDQQMSRLEMRIKKELENKIKKKEPEEQK 207
>SB_50371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 673 YYLNEDDALHFHLTLKHACDDHDSSYYAR 759
Y + +D L FH+T KHA + D+ +AR
Sbjct: 10 YIIAGEDQLFFHITCKHAAPNTDAKRFAR 38
>SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)
Length = 672
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 640 HWTPFLSWTSKYL*LKWMVGTMGVPWVDDGTHTGCKKRE 524
HW WT+++L K+ V + G + GC+K E
Sbjct: 329 HWPAIQKWTNEFLRAKYSNTDTRVAFAPSGEYEGCEKAE 367
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Frame = +2
Query: 176 AKMKEIMQLKNYMANPITPVEQLEQNKDDMKTQMELLIMRIQAEFCRALEKEEDKE---- 343
AK ++I LK + + Q++ + D + + L +I+ + +L + DK+
Sbjct: 881 AKNRDIKDLKETVVKFKRRISQIQVDIDILMNEKTELAKQIEKQVSLSLSESSDKQHSMN 940
Query: 344 --AKFTVDRWTRKEGGGGITCVLQDGRVFEKAGVNISVVSGKLPPA 475
K+ + RK G C+L+ ++ NIS++ L A
Sbjct: 941 EKEKYAMPPLLRKSSSTGDACILKAEEQNQQLLANISILETNLKKA 986
>SB_40058| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 1048
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +1
Query: 394 HLCSTRRQSL*ESRSEYISCLRETSSSC--HSADAEQRQEST 513
HL +TRRQ ES EY+ L+ S C S A Q E +
Sbjct: 88 HLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEES 129
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 546 TPAAKNGSSA--FCRFLPLLRIC*MAAGGSFPETTDIFTPAFSKTLPSCRTQ 397
TP+A G S C + A GGSF +T + +P +KT P CR +
Sbjct: 2309 TPSANTGPSVDHTCGNSSCYYMYVEAGGGSFLDTARLTSPNMTKTGPGCRME 2360
>SB_19747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1
Query: 411 SCRTQVIPPPPSLRVH 364
SC T +PPPPS RVH
Sbjct: 89 SCSTWKVPPPPSHRVH 104
>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 997
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = -1
Query: 669 GSDRCRLR---TTTGPHSYPGPQSI 604
G D CR+R T TGP PGP++I
Sbjct: 311 GCDYCRIRCIATCTGPEMIPGPETI 335
>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
Length = 2074
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1
Query: 411 SCRTQVIPPPPSLRVH 364
SC T +PPPPS RVH
Sbjct: 686 SCSTWKVPPPPSHRVH 701
>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
Length = 1177
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/90 (21%), Positives = 38/90 (42%)
Frame = +2
Query: 182 MKEIMQLKNYMANPITPVEQLEQNKDDMKTQMELLIMRIQAEFCRALEKEEDKEAKFTVD 361
+KE+ LKN + + +E+ + + ++K I + + A+ ++E EAK
Sbjct: 87 LKEVASLKNDLQSMGEQLEREKAHNAELKAIKTQQISALTVKLATAIRQKEAAEAKMHPS 146
Query: 362 RWTRKEGGGGITCVLQDGRVFEKAGVNISV 451
T + + C QD + E + V
Sbjct: 147 HMT-NDSADPVPCQTQDAQETENVSLRNEV 175
>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4482
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = +2
Query: 197 QLKNYMANPITPVEQLEQNKDDMKTQMELLIMRIQAEFCRALEKE 331
+L ++ + +TP EQ+E + T++ + ++++ E CR+L E
Sbjct: 3181 RLASWFSTGLTPEEQVELQFEAYLTKLAVKSLKMKEEECRSLRAE 3225
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,601,672
Number of Sequences: 59808
Number of extensions: 516300
Number of successful extensions: 1653
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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