Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_D02
(846 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g03475.1 68414.m00329 coproporphyrinogen III oxidase, putativ... 105 5e-23
At4g03205.1 68417.m00438 coproporphyrinogen III oxidase, putativ... 104 9e-23
At5g19950.3 68418.m02375 expressed protein 30 2.2
At5g19950.2 68418.m02374 expressed protein 30 2.2
At5g19950.1 68418.m02373 expressed protein 30 2.2
At2g40950.1 68415.m05056 bZIP transcription factor family protei... 29 5.1
At1g08780.1 68414.m00977 prefoldin, putative similar to Swiss-Pr... 29 5.1
At3g28190.1 68416.m03522 hypothetical protein 28 6.8
At2g29690.1 68415.m03609 anthranilate synthase, alpha subunit, c... 28 6.8
At3g15170.1 68416.m01918 cup-shaped cotyledon1 protein / CUC1 pr... 28 9.0
At1g49150.1 68414.m05510 hypothetical protein 28 9.0
At1g29150.1 68414.m03567 26S proteasome regulatory subunit, puta... 28 9.0
>At1g03475.1 68414.m00329 coproporphyrinogen III oxidase, putative /
coproporphyrinogenase, putative / coprogen oxidase,
putative similar to coproporphyrinogen III oxidase,
chloroplast [precursor] from Glycine max [SP|P35055],
Nicotiana tabacum [SP|Q42946], Hordeum vulgare
[SP|Q42840], ESTs gb|AA586260 and dbj|D48620; contains
Pfam domain coproporphyrinogen III oxidase, aerobic
[PF01218]
Length = 362
Score = 105 bits (251), Expect = 5e-23
Identities = 51/111 (45%), Positives = 69/111 (62%)
Frame = +2
Query: 251 NKDDMKTQMELLIMRIQAEFCRALEKEEDKEAKFTVDRWTRKEGGGGITCVLQDGRVFEK 430
+ ++ + E +I Q C A+E E KF D W+R GGGGI+ VLQDG VFEK
Sbjct: 76 SSSSVRARFETMIRAAQDSVCDAIEAIEGGP-KFKEDVWSRPGGGGGISRVLQDGNVFEK 134
Query: 431 AGVNISVVSGKLPPAAIQQMRSRGKNLQNAELPFFAAGVSAVIHPRNPHGP 583
AGVN+SVV G +PP A + + + + +PFFAAGVS+V+HP+NP P
Sbjct: 135 AGVNVSVVYGVMPPEAYRAAKGSASDQKPGPVPFFAAGVSSVLHPKNPFAP 185
Score = 61.3 bits (142), Expect = 8e-10
Identities = 28/56 (50%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 676 YLNEDDALHFHLTLKHACDDHDSSYYARFXKWCDDXFYXPTXVKGXGXRD-FFDDL 840
Y+ E+D HFH K ACD D S+Y RF KWCDD FY + G FFDDL
Sbjct: 221 YIFEEDVKHFHSIQKQACDKFDPSFYPRFKKWCDDYFYIKHRDERRGLGGIFFDDL 276
Score = 54.8 bits (126), Expect = 7e-08
Identities = 23/38 (60%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Frame = +3
Query: 573 PMVPTIHFNYRYFEVQDKNGV-----QWWFGGGTDLTP 671
P PT+HFNYRYFE V QWWFGGGTD TP
Sbjct: 182 PFAPTLHFNYRYFETDAPKDVPGAPRQWWFGGGTDFTP 219
>At4g03205.1 68417.m00438 coproporphyrinogen III oxidase, putative /
coproporphyrinogenase, putative / coprogen oxidase,
putative
Length = 233
Score = 104 bits (249), Expect = 9e-23
Identities = 48/116 (41%), Positives = 73/116 (62%)
Frame = +2
Query: 236 EQLEQNKDDMKTQMELLIMRIQAEFCRALEKEEDKEAKFTVDRWTRKEGGGGITCVLQDG 415
+Q + + ++ + E +I Q + C A+E E+ KF D W+R GGGGI+ +LQDG
Sbjct: 71 DQTQSSSYSVRARFEKMIRTAQDKVCEAIEAVEEGP-KFKEDVWSRPGGGGGISRILQDG 129
Query: 416 RVFEKAGVNISVVSGKLPPAAIQQMRSRGKNLQNAELPFFAAGVSAVIHPRNPHGP 583
V+EKAGVN+SV+ G +PP A + ++ + +PFFAAG S+V+HP+NP P
Sbjct: 130 NVWEKAGVNVSVIYGVMPPEAYRAAKAATSEQKPGPIPFFAAGTSSVLHPQNPFAP 185
Score = 54.8 bits (126), Expect = 7e-08
Identities = 23/38 (60%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Frame = +3
Query: 573 PMVPTIHFNYRYFEVQDKNGV-----QWWFGGGTDLTP 671
P PT+HFNYRYFE V QWWFGGGTD TP
Sbjct: 182 PFAPTLHFNYRYFETDAPKDVPGAPRQWWFGGGTDFTP 219
>At5g19950.3 68418.m02375 expressed protein
Length = 441
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 314 RALEKEEDKEAKFTVDRWTRKEGGGG 391
R +EE+ A FT+D W ++ GGG
Sbjct: 336 RGRGREEEDSAVFTLDEWEKRNTGGG 361
>At5g19950.2 68418.m02374 expressed protein
Length = 443
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 314 RALEKEEDKEAKFTVDRWTRKEGGGG 391
R +EE+ A FT+D W ++ GGG
Sbjct: 336 RGRGREEEDSAVFTLDEWEKRNTGGG 361
>At5g19950.1 68418.m02373 expressed protein
Length = 443
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 314 RALEKEEDKEAKFTVDRWTRKEGGGG 391
R +EE+ A FT+D W ++ GGG
Sbjct: 336 RGRGREEEDSAVFTLDEWEKRNTGGG 361
>At2g40950.1 68415.m05056 bZIP transcription factor family protein
similar to AtbZIP transcription factor GI:17065880 from
[Arabidopsis thaliana]; contains Pfam profile: bZIP
transcription factor PF00170
Length = 721
Score = 28.7 bits (61), Expect = 5.1
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Frame = +2
Query: 125 LLSLXTGIVAYNQYQSKAKMKEIMQLKNYM-ANPITPV---EQLEQNKDDMKTQMELLIM 292
+L+ + + +SK + ++M K+Y A P+ V E+L ++ K + + +
Sbjct: 491 ILASEKAVASRKASESKERKADLMISKDYTPALPLPDVGRTEELAKHLYRSKAEKQKALS 550
Query: 293 RIQAEFCRALEKEEDKEAKFTVDRWTRKEGGGGITCVLQDGRVFEKAGVNISVVSGKLPP 472
A+ + ++ + K A + +W R EG G + G E ++S SG + P
Sbjct: 551 SGSADTLK--DQVKTKAANGEMQQWFR-EGVAGP--MFSSGMCTEVFQFDVSSTSGAIIP 605
Query: 473 AAIQQMRSRGKN 508
AA GKN
Sbjct: 606 AATNVSAEHGKN 617
>At1g08780.1 68414.m00977 prefoldin, putative similar to
Swiss-Prot:Q9NQP4 prefoldin subunit 4 (Protein C-1)
[Homo sapiens]
Length = 129
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 233 VEQLEQNKDDMKTQMELLIMRIQAEFCRALEKEED 337
+E+LEQ K+ + TQM L + A+F ++ EED
Sbjct: 95 LEKLEQEKESIVTQMAALKKVLYAKFKDSINLEED 129
>At3g28190.1 68416.m03522 hypothetical protein
Length = 112
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 239 QLEQNKDDMKTQMELLIMRIQAEFCRALEKEEDKEAKF 352
QLE K+ +K QME +A+ + E E+ EAK+
Sbjct: 37 QLESFKETVKVQMESFTEPSKAQMAKYREMEQKMEAKY 74
>At2g29690.1 68415.m03609 anthranilate synthase, alpha subunit,
component I-2 (ASA2) identical to SP|P32069
Length = 621
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 530 FFAAGVSAVIHPRNPHGPHHP 592
FF AV H R PH PH P
Sbjct: 13 FFTVEAIAVTHHRTPHPPHFP 33
>At3g15170.1 68416.m01918 cup-shaped cotyledon1 protein / CUC1
protein (CUC1) identical to CUP-SHAPED COTYLEDON1 (CUC1)
(GI:12060422) [Arabidopsis thaliana]
Length = 310
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 447 DIFTPAFSKTLPSCRTQVIPPPPSLRVH 364
D AF LPS V+PPPPS ++
Sbjct: 269 DAAAAAFFPNLPSLPPTVLPPPPSFAMY 296
>At1g49150.1 68414.m05510 hypothetical protein
Length = 148
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 227 TPVEQLEQNKDDMKTQMELL-IMRIQAEFCRALEKEEDK 340
TP + LE++K DM T+M++ M + F L K E+K
Sbjct: 20 TPTDNLEKDKKDMTTEMKISDAMEMLEGFGIRLHKMEEK 58
>At1g29150.1 68414.m03567 26S proteasome regulatory subunit,
putative (RPN6) similar to 19S proteosome subunit 9
GB:AAC34120 GI:3450889 from [Arabidopsis thaliana]
Length = 419
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 524 ALRFVDSCLCSASAEWQLEEVSRRQL--IYSLLLSQRLCRLVE 402
+L+ ++ L A+ + + + R L +Y LL Q LCRL+E
Sbjct: 294 SLKLFENALRDYKAQLEDDPIVHRHLSSLYDTLLEQNLCRLIE 336
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,216,509
Number of Sequences: 28952
Number of extensions: 349948
Number of successful extensions: 1076
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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