Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D01
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    48   2e-06
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.22 
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    28   2.1  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       27   3.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.6  
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    27   4.8  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           26   6.3  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
 Frame = +2

Query: 107 EHPKFNFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKY-SHLA 283
           ++P+ NF+G L+GP+G+T+K ++  +  K+A+ G+GS+++ +         DP    ++ 
Sbjct: 196 DYPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSVKEGKGRS------DPSVRGNME 249

Query: 284 DDLHVEISAIAPPAEAHA 337
           +DLH  ++A +     HA
Sbjct: 250 EDLHCLVTADSEDKINHA 267


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 18/68 (26%), Positives = 21/68 (30%)
 Frame = +2

Query: 668 PXPXXXLXSPWXXPPXXPAPPXXXSXPXXXPPAAPXXXXAXXSSXXRGAXXXSPXAXPXP 847
           P P   L  P   PP    PP   +     P  AP    +        A   SP + P  
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSL 190

Query: 848 PXXXPXXP 871
           P   P  P
Sbjct: 191 PSAVPPMP 198



 Score = 29.5 bits (63), Expect = 0.68
 Identities = 20/66 (30%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
 Frame = +2

Query: 668 PXPXXXLXSPWXXPPXXP-APPXXXSXPXXXPPAAPXXXXAXXSSXXRGAXXXSPXAXPX 844
           P P     SP   PP    APP   S P    PAAP        S         P   P 
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204

Query: 845 PPXXXP 862
           P    P
Sbjct: 205 PLSQAP 210


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +2

Query: 119 FNFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGS 217
           F+    ++GP+G  +K +Q++T  ++ + G+GS
Sbjct: 303 FHLRQAIVGPQGAYVKHIQQETRTRVQIKGQGS 335


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 107 EHPKFNFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQ 232
           +HPK  FV    GPK   ++Q++E  + +  V   GS+R  Q
Sbjct: 218 QHPKVRFVIAGDGPKSIDLEQMREKYMLQDRVEMLGSVRHDQ 259


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 27/92 (29%), Positives = 27/92 (29%), Gaps = 5/92 (5%)
 Frame = +2

Query: 632  GXLPXXXXXFXXPXPXXX-LXSPWXXPPXXPAPPXXXSXPXXXPPAAP---XXXXAXXSS 799
            G  P        P P    L SP   PP    P    S P    PAAP          SS
Sbjct: 960  GPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSS 1019

Query: 800  XXRGAXXXSPXAXPXP-PXXXPXXPRXXXTXP 892
                    S  A P P P   P  P    T P
Sbjct: 1020 KAPPVPLPSADAPPIPVPSTAPPVPIPTSTPP 1051



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 20/79 (25%), Positives = 22/79 (27%), Gaps = 3/79 (3%)
 Frame = +3

Query: 660  SSXPXPXXXSXAPGPAPPXXXPRL---XXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPP 830
            S+ P P   S AP   PP   P              P P      P P     AP    P
Sbjct: 1048 STPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107

Query: 831  XLXXXPXXXLXXXPAVXXP 887
             +   P       P V  P
Sbjct: 1108 SVAVPPVPAPSGAPPVPKP 1126


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 228 LSLIEPLPSTAILHSVSSCNCFIVFPFG-PNSLPTKLNLG 112
           L LI+    + I+HS    N FI +PF  P  +  KL+ G
Sbjct: 96  LKLIDDYNFSIIIHSEDQVNSFIKYPFNRPVEIWLKLDSG 135


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 21  VVSPRTQNMWMCSVTNQPKSQLKFLCQLR 107
           VV+  T    MC  T++ K Q  FLC +R
Sbjct: 165 VVNIETNESHMCIPTDKRKDQTLFLCTIR 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,262
Number of Sequences: 5004
Number of extensions: 44517
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)