Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_D01
(898 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.) 146 2e-35
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 5e-07
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 35 0.10
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.72
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 31 1.7
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4) 29 3.9
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 29 5.1
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 28 8.9
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 28 8.9
>SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 146 bits (355), Expect = 2e-35
Identities = 66/123 (53%), Positives = 91/123 (73%), Gaps = 1/123 (0%)
Frame = +2
Query: 107 EHPKFNFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLAD 286
+HPKFNFVG+LLGP+GNT K+LQ T KM++LG+GSMRD++KEEELR + DPKY+HL +
Sbjct: 111 DHPKFNFVGKLLGPRGNTFKRLQNSTGTKMSILGKGSMRDKEKEEELRATEDPKYAHLGE 170
Query: 287 DLHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMXDIDV-RGAERTHPYRE 463
+LHV I APP +AHAR+ A+ E+KKYL+P+ N+ + QM ++ + E T+
Sbjct: 171 ELHVLIEVEAPPGQAHARLGIAIEEIKKYLIPEMNDEIHQEQMREMAILNSIEDTN--NN 228
Query: 464 PAP 472
PAP
Sbjct: 229 PAP 231
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 52.4 bits (120), Expect = 5e-07
Identities = 24/88 (27%), Positives = 51/88 (57%)
Frame = +2
Query: 107 EHPKFNFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLAD 286
E+P+ NF+G L+GP+GNT+K ++++T K+ + G+GS++D ++ + D + + +
Sbjct: 111 ENPEVNFIGLLIGPRGNTLKNMEKETNAKIMIRGKGSIKDGKQ----GRGRDMQLMNSGE 166
Query: 287 DLHVEISAIAPPAEAHARIAYALAEVKK 370
D + P AE+ + + ++ K
Sbjct: 167 DEPLHALVTGPTAESVKKAVNMIQDILK 194
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 34.7 bits (76), Expect = 0.10
Identities = 19/68 (27%), Positives = 19/68 (27%)
Frame = +3
Query: 669 PXPXXXSXAPGPAPPXXXPRLXXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPPXLXXXP 848
P P P P PP P P PP P PP P PP P
Sbjct: 373 PPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPP 432
Query: 849 XXXLXXXP 872
L P
Sbjct: 433 ALRLACAP 440
Score = 33.9 bits (74), Expect = 0.18
Identities = 19/70 (27%), Positives = 21/70 (30%)
Frame = +3
Query: 669 PXPXXXSXAPGPAPPXXXPRLXXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPPXLXXXP 848
P P P P+PP P P PP P PP P PP P
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPP 424
Query: 849 XXXLXXXPAV 878
PA+
Sbjct: 425 PPPPPPPPAL 434
Score = 31.9 bits (69), Expect = 0.72
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = +3
Query: 696 PGPAPPXXXPRLXXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPPXLXXXPXXXLXXXPA 875
P P PP P P PP P PP P PP P P
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPP 425
Query: 876 VXXPXP 893
P P
Sbjct: 426 PPPPPP 431
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/64 (26%), Positives = 17/64 (26%)
Frame = +3
Query: 702 PAPPXXXPRLXXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPPXLXXXPXXXLXXXPAVX 881
P PP P P PP P PP P PP P P
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPP 424
Query: 882 XPXP 893
P P
Sbjct: 425 PPPP 428
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/58 (31%), Positives = 19/58 (32%)
Frame = +3
Query: 663 SXPXPXXXSXAPGPAPPXXXPRLXXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPPXL 836
S P P P P PP P P PP P PP +A PP L
Sbjct: 388 SPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPALRLA--CAPPRL 443
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/67 (28%), Positives = 20/67 (29%)
Frame = +3
Query: 693 APGPAPPXXXPRLXXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPPXLXXXPXXXLXXXP 872
+P P PP P P PP P PP P PP P P
Sbjct: 364 SPPPPPPPPPP-----PPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPP 418
Query: 873 AVXXPXP 893
A P P
Sbjct: 419 APPPPPP 425
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/66 (28%), Positives = 19/66 (28%)
Frame = +3
Query: 696 PGPAPPXXXPRLXXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPPXLXXXPXXXLXXXPA 875
P P PP P P PPQ P PP P PP P P
Sbjct: 369 PPPPPPPPSPPPPPPPPPPSPPPPPQP--PPPPPPPPPPPPPPPPPPPPPPPAPPPPPPP 426
Query: 876 VXXPXP 893
P P
Sbjct: 427 PPPPPP 432
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 31.9 bits (69), Expect = 0.72
Identities = 18/75 (24%), Positives = 20/75 (26%)
Frame = +2
Query: 638 LPXXXXXFXXPXPXXXLXSPWXXPPXXPAPPXXXSXPXXXPPAAPXXXXAXXSSXXRGAX 817
LP P P P PP P P P PP + G
Sbjct: 674 LPIPIQTMVPPPPPPPPPPPPPPPPPPPQPSTPPPPPPSTPPVQQSGAPGSPAGSPSGTS 733
Query: 818 XXSPXAXPXPPXXXP 862
+P P PP P
Sbjct: 734 AGNPQQQPPPPGQLP 748
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 31.5 bits (68), Expect = 0.96
Identities = 16/58 (27%), Positives = 17/58 (29%)
Frame = +3
Query: 675 PXXXSXAPGPAPPXXXPRLXXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPPXLXXXP 848
P + P P PP P P PP P PP P PP P
Sbjct: 358 PPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPP 415
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/60 (26%), Positives = 19/60 (31%)
Frame = +3
Query: 636 PSLXXXXXSSXPXPXXXSXAPGPAPPXXXPRLXXXXXXXXXPXPPQXXXXPXPPXXXVAP 815
PS ++ P P + P P PP P P PP P PP P
Sbjct: 355 PSPPPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPPPPPPTNGP 414
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/54 (27%), Positives = 16/54 (29%)
Frame = +3
Query: 669 PXPXXXSXAPGPAPPXXXPRLXXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPP 830
P P + P P P P P PP P PP P PP
Sbjct: 357 PPPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPPPPPP 410
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/55 (29%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Frame = +3
Query: 669 PXPXXXSXAPGPAPPXXX-PRLXXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPP 830
P P + P P PP P P PP P PP P PP
Sbjct: 346 PPPPPTNNPPSPPPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPP 400
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = +3
Query: 702 PAPPXXXPRLXXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPPXLXXXP 848
P PP P P PP P PP P PP P
Sbjct: 347 PPPPTNNPPSPPPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPP 395
>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2557
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 176 EDTLCKM-AVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVE 301
+DTL + AVL RG E+EL Q+L+ KY L D L E
Sbjct: 1292 QDTLANVRAVLTRGEEGVAADEDELVQALESKYDALRDKLMAE 1334
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +2
Query: 161 MKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVE 301
++ ++E+ L ++ + G+ R +E+EL ++L+ KY L D L +E
Sbjct: 436 VQAIEEEWLDCLSAVILGTEEGRGQEDELLKALEDKYDALRDKLLLE 482
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/68 (25%), Positives = 19/68 (27%)
Frame = +2
Query: 668 PXPXXXLXSPWXXPPXXPAPPXXXSXPXXXPPAAPXXXXAXXSSXXRGAXXXSPXAXPXP 847
P P + PP P P PP AP + A P P P
Sbjct: 138 PPPPPPIAPATGGPPPPPPIAPATGGPPPPPPIAPAATVPAPAVPLAAASPPPPSGGPPP 197
Query: 848 PXXXPXXP 871
P P P
Sbjct: 198 PPPPPPPP 205
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/75 (26%), Positives = 20/75 (26%)
Frame = +3
Query: 669 PXPXXXSXAPGPAPPXXXPRLXXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPPXLXXXP 848
P P P P PP P P PP P PP P PP P
Sbjct: 117 PPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPP-PPNPPYPPPLYPPPPNPPPPNAPYP 175
Query: 849 XXXLXXXPAVXXPXP 893
P P P
Sbjct: 176 PPPYPPPPNPPYPPP 190
Score = 29.5 bits (63), Expect = 3.9
Identities = 20/70 (28%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Frame = +2
Query: 668 PXPXXXLXSPWXXPPXXPAPPXXXS--XPXXXPPAAPXXXXAXXSSXXRGAXXXSPXAXP 841
P P P+ PP P PP + P PP P S A P P
Sbjct: 98 PYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSP--NAPYPPPPNPP 155
Query: 842 XPPXXXPXXP 871
PP P P
Sbjct: 156 YPPPLYPPPP 165
Score = 29.5 bits (63), Expect = 3.9
Identities = 20/73 (27%), Positives = 21/73 (28%)
Frame = +1
Query: 673 PPXXPPXPLXXPPXXPXPAXXXXXXXTXXPXRPXXXPGXXLLXXSWRXXRFPPXSXXPPX 852
PP PP P PP P P P P P +PP PP
Sbjct: 100 PPYPPPPPYPPPPNPPYPPPPNAPY--PPPPNPPYPPPPNAPYPPSPNAPYPP-PPNPPY 156
Query: 853 XXSXXPPXXXHPP 891
PP PP
Sbjct: 157 PPPLYPPPPNPPP 169
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 668 PXPXXXLXSPWXXPPXXPAPPXXXSXPXXXPPAAP 772
P P +P PP PAPP + P PP AP
Sbjct: 76 PPPAAPPAAP-PPPPPLPAPPPPPAQPAPQPPPAP 109
>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
Length = 330
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/45 (28%), Positives = 15/45 (33%)
Frame = +3
Query: 696 PGPAPPXXXPRLXXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPP 830
P P PP P + P PP P PP + PP
Sbjct: 282 PPPPPPSNTPGMFASSGFQPPPPPPTDFAPPPPPPEPTSELPPPP 326
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 695 PWXXPPXXPAPPXXXSXPXXXPPAA 769
P PP PAPP + P PPAA
Sbjct: 522 PAPQPPSPPAPPPKPAPPPRSPPAA 546
>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = +2
Query: 707 PPXXPAPPXXXSXPXXXPPA-APXXXXAXXSSXXRGAXXXSPXAXPXPP 850
PP PAPP PPA P A + G +P P PP
Sbjct: 161 PPQPPAPPAAPFMAPAAPPAPPPPGAPAAPPAPPFGGPPSAPPPPPAPP 209
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +3
Query: 669 PXPXXXSXAPGPAPPXXXPRLXXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPP 830
P P AP P PP + P PP P PP AP PP
Sbjct: 317 PPPARMGTAPPPPPPSRSSQ-RPPPPSRGAPPPPSMGMAP-PPVGGAAPPPPPP 368
>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3212
Score = 28.3 bits (60), Expect = 8.9
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +2
Query: 173 QEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVEISAIAPPAEAHARIAYA 352
+ED+L KMA+ +R R +L S K +H A D E I + +A
Sbjct: 1409 EEDSLTKMALTDDVLIRGRIHLCDLAGSERLKKTHAAGDRLSEAQHINSSLLELGNVIHA 1468
Query: 353 LAEV--KKYLVPDTNETV 400
LAE KK VP N T+
Sbjct: 1469 LAEAEDKKTHVPFRNSTL 1486
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/74 (28%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Frame = +1
Query: 673 PPXXPPXPLXXPPXXPXPAXXXXXXXTXXPXRPXXXPGXXLLXXSWRXXRFPPXSXXPPX 852
PP PP PL PP P T P P P R+PP P
Sbjct: 261 PPRYPPSPLRYPPIPPRYPPSLIRYPTLPPRYPPSPP-----RYPPSPPRYPPSLHRYPQ 315
Query: 853 XXSXXPP-XXXHPP 891
PP +PP
Sbjct: 316 SPLRYPPSPIRYPP 329
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,189,268
Number of Sequences: 59808
Number of extensions: 375988
Number of successful extensions: 1826
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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