Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_D01
(898 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 95 6e-20
AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 95 6e-20
AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna bin... 95 6e-20
AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 95 6e-20
AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna bin... 95 6e-20
Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical pr... 95 8e-20
U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein. 95 8e-20
U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical p... 66 3e-11
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 63 3e-10
AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical ... 59 4e-09
Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical p... 50 3e-06
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 50 3e-06
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 50 3e-06
Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical p... 38 0.010
Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical pr... 38 0.010
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 34 0.12
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 1.5
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 31 1.5
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 31 1.5
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 30 2.0
U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein. 30 2.6
AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess... 30 2.6
AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess... 30 2.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical pr... 29 4.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.5
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 29 6.0
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 7.9
>AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical
protein E02D9.1b protein.
Length = 315
Score = 95.1 bits (226), Expect = 6e-20
Identities = 41/96 (42%), Positives = 64/96 (66%)
Frame = +2
Query: 110 HPKFNFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADD 289
HP FNF+G++LGPKG T++ L + C + +LGRGS +DR+KE EL S DP+++H +
Sbjct: 140 HPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFSGP 199
Query: 290 LHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNET 397
LHV++ +AP A+ R+A + E+ + L P +T
Sbjct: 200 LHVKVETVAPAYIAYGRVAAVIEELSRILQPIHEDT 235
>AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical
protein E02D9.1c protein.
Length = 317
Score = 95.1 bits (226), Expect = 6e-20
Identities = 41/96 (42%), Positives = 64/96 (66%)
Frame = +2
Query: 110 HPKFNFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADD 289
HP FNF+G++LGPKG T++ L + C + +LGRGS +DR+KE EL S DP+++H +
Sbjct: 140 HPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFSGP 199
Query: 290 LHVEISAIAPPAEAHARIAYALAEVKKYLVPDTNET 397
LHV++ +AP A+ R+A + E+ + L P +T
Sbjct: 200 LHVKVETVAPAYIAYGRVAAVIEELSRILQPIHEDT 235
>AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform a protein.
Length = 328
Score = 95.1 bits (226), Expect = 6e-20
Identities = 46/92 (50%), Positives = 63/92 (68%)
Frame = +2
Query: 107 EHPKFNFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLAD 286
EHP +NFVGR+LGP+G T KQL+++T CK+ V GRGSMRD++KEE R P + HL++
Sbjct: 98 EHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEELNRGK--PNWEHLSE 155
Query: 287 DLHVEISAIAPPAEAHARIAYALAEVKKYLVP 382
+LHV I A ++ A+ EV+K LVP
Sbjct: 156 ELHVLIQCEDTENRAKVKLMRAVEEVRKLLVP 187
>AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform c protein.
Length = 445
Score = 95.1 bits (226), Expect = 6e-20
Identities = 46/92 (50%), Positives = 63/92 (68%)
Frame = +2
Query: 107 EHPKFNFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLAD 286
EHP +NFVGR+LGP+G T KQL+++T CK+ V GRGSMRD++KEE R P + HL++
Sbjct: 140 EHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEELNRGK--PNWEHLSE 197
Query: 287 DLHVEISAIAPPAEAHARIAYALAEVKKYLVP 382
+LHV I A ++ A+ EV+K LVP
Sbjct: 198 ELHVLIQCEDTENRAKVKLMRAVEEVRKLLVP 229
>AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform b protein.
Length = 403
Score = 95.1 bits (226), Expect = 6e-20
Identities = 46/92 (50%), Positives = 63/92 (68%)
Frame = +2
Query: 107 EHPKFNFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLAD 286
EHP +NFVGR+LGP+G T KQL+++T CK+ V GRGSMRD++KEE R P + HL++
Sbjct: 98 EHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEELNRGK--PNWEHLSE 155
Query: 287 DLHVEISAIAPPAEAHARIAYALAEVKKYLVP 382
+LHV I A ++ A+ EV+K LVP
Sbjct: 156 ELHVLIQCEDTENRAKVKLMRAVEEVRKLLVP 187
>Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical
protein T23G11.3 protein.
Length = 463
Score = 94.7 bits (225), Expect = 8e-20
Identities = 53/127 (41%), Positives = 71/127 (55%), Gaps = 3/127 (2%)
Frame = +2
Query: 107 EHPKFNFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLAD 286
E+P +NFVGR+LGP+G T KQL++DT CK+ V G+GSMRD+ KE R + + HL D
Sbjct: 215 EYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKAN--WEHLED 272
Query: 287 DLHVEISAIAPPAEAHARIAYALAEVKKYLVP---DTNETVWMSQMXDIDVRGAERTHPY 457
DLHV + H ++ AL +VKK L+P T+E M + G R
Sbjct: 273 DLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAIINGTYRPMKS 332
Query: 458 REPAPVM 478
PA VM
Sbjct: 333 PNPARVM 339
>U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein.
Length = 463
Score = 94.7 bits (225), Expect = 8e-20
Identities = 53/127 (41%), Positives = 71/127 (55%), Gaps = 3/127 (2%)
Frame = +2
Query: 107 EHPKFNFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLAD 286
E+P +NFVGR+LGP+G T KQL++DT CK+ V G+GSMRD+ KE R + + HL D
Sbjct: 215 EYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKAN--WEHLED 272
Query: 287 DLHVEISAIAPPAEAHARIAYALAEVKKYLVP---DTNETVWMSQMXDIDVRGAERTHPY 457
DLHV + H ++ AL +VKK L+P T+E M + G R
Sbjct: 273 DLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAIINGTYRPMKS 332
Query: 458 REPAPVM 478
PA VM
Sbjct: 333 PNPARVM 339
>U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical
protein B0280.17 protein.
Length = 235
Score = 66.1 bits (154), Expect = 3e-11
Identities = 34/103 (33%), Positives = 61/103 (59%)
Frame = +2
Query: 122 NFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVE 301
N VGRL+GP+G T++QL++D CK+ + G+G +D KEE LR+ + + HL + +HV
Sbjct: 129 NPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKEERLRERVG--WEHLKEPIHVM 186
Query: 302 ISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMXDIDV 430
IS + EA + ++ ++ + + T+ + SQ+ + V
Sbjct: 187 ISVRSDSEEAASEKLSSIKKMLQEFLEHTDSELKRSQLMQLAV 229
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 62.9 bits (146), Expect = 3e-10
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 12/120 (10%)
Frame = +2
Query: 107 EHPKFNFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSL----DPKYS 274
++PK+NFVGR+LGP+G T+KQL+++T C++ V GR S E + +S P S
Sbjct: 81 KYPKYNFVGRILGPRGMTVKQLEKETGCRIFVRGRASTTASNPESKPNKSTPSFSKPSLS 140
Query: 275 HLA------DDLHVEISAIAPPAEAHARIAYALAEVKKYLVP--DTNETVWMSQMXDIDV 430
++ + LHV I + A A++A+A+ +++ L P D + + Q+ DI +
Sbjct: 141 IISRNALTEEPLHVYIECQDTQSAAQAKMAHAVEVIQRLLSPPKDGKDELKRQQLVDISL 200
>AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical
protein K07H8.9 protein.
Length = 254
Score = 59.3 bits (137), Expect = 4e-09
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Frame = +2
Query: 110 HPKFNFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSL-DPKYSHLAD 286
+P +NF+GR++GP+G T KQL++DT C++ + RG+ ++ L ++ D +
Sbjct: 132 YPTYNFIGRIIGPRGTTAKQLEKDTGCRIMI--RGNHSNKMYGNALHKTHGDGSQDAIDL 189
Query: 287 DLHVEISAIAPPAEAHARIAYALAEVKKYLVP 382
L V + P EA ARI AL V+ LVP
Sbjct: 190 PLRVIVETSGPRREATARITAALETVQVLLVP 221
>Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical
protein Y57G11C.36 protein.
Length = 380
Score = 49.6 bits (113), Expect = 3e-06
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +2
Query: 113 PKFNFVGRLLGPKGNTMKQLQEDTLCKMAVLGR 211
P +NFVGRLLGP+G T KQL+ T C++ +LGR
Sbjct: 124 PDYNFVGRLLGPRGTTAKQLEVTTGCRITILGR 156
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 49.6 bits (113), Expect = 3e-06
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Frame = +2
Query: 107 EHPKFNFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLAD 286
+ P NFVG L+GP+GNT+K L+ +T K+ + G+GS+ KE +L L P +
Sbjct: 313 QFPDLNFVGLLIGPRGNTLKSLEAETGAKIIIRGKGSI----KEGKLTNRLGPMPGE-NE 367
Query: 287 DLHVEISA--IAPPAEAHARIAYALAEVKKYLVPDTNE 394
LH ++ + +A +I +AE +PD NE
Sbjct: 368 PLHAYVTGTDMNVIKKACEKIKQVIAEAT--ALPDNNE 403
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 49.6 bits (113), Expect = 3e-06
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Frame = +2
Query: 107 EHPKFNFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLAD 286
+ P NFVG L+GP+GNT+K L+ +T K+ + G+GS+ KE +L L P +
Sbjct: 313 QFPDLNFVGLLIGPRGNTLKSLEAETGAKIIIRGKGSI----KEGKLTNRLGPMPGE-NE 367
Query: 287 DLHVEISA--IAPPAEAHARIAYALAEVKKYLVPDTNE 394
LH ++ + +A +I +AE +PD NE
Sbjct: 368 PLHAYVTGTDMNVIKKACEKIKQVIAEAT--ALPDNNE 403
>Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical
protein F54D1.1 protein.
Length = 278
Score = 43.6 bits (98), Expect = 2e-04
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Frame = +2
Query: 116 KFNFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLH 295
K N++GR+LGP G + + ++ + + G GS+R++ +E +R+ + HL + LH
Sbjct: 151 KCNYIGRILGPSGMSARMIENQYDVTLLIRGAGSVRNKAMDERVRK----RNEHLEEPLH 206
Query: 296 VEISAIAPPAEAHARIAYALAEVKKYLVPDTNETVWMSQMXD-IDVRGAERTHPYRE 463
V + A I AE + L+ ++ M Q+ + G + P R+
Sbjct: 207 VLLIARHNDKTKCEEILNKAAEKIESLLTPIHDEYKMDQLVSYAKMNGTYQERPKRK 263
>Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical
protein C12D8.1c protein.
Length = 548
Score = 37.9 bits (84), Expect = 0.010
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +2
Query: 122 NFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVE 301
N G ++G G+T++QLQE + CKM +L + + + + LR + DP+ LA L E
Sbjct: 101 NRCGLIIGKSGDTIRQLQEKSGCKM-ILVQDNQSVSDQSKPLRITGDPQKIELAKQLVAE 159
Query: 302 I 304
I
Sbjct: 160 I 160
>Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical
protein C12D8.1b protein.
Length = 611
Score = 37.9 bits (84), Expect = 0.010
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +2
Query: 122 NFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVE 301
N G ++G G+T++QLQE + CKM +L + + + + LR + DP+ LA L E
Sbjct: 164 NRCGLIIGKSGDTIRQLQEKSGCKM-ILVQDNQSVSDQSKPLRITGDPQKIELAKQLVAE 222
Query: 302 I 304
I
Sbjct: 223 I 223
>Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical
protein C12D8.1a protein.
Length = 589
Score = 37.9 bits (84), Expect = 0.010
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +2
Query: 122 NFVGRLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVE 301
N G ++G G+T++QLQE + CKM +L + + + + LR + DP+ LA L E
Sbjct: 142 NRCGLIIGKSGDTIRQLQEKSGCKM-ILVQDNQSVSDQSKPLRITGDPQKIELAKQLVAE 200
Query: 302 I 304
I
Sbjct: 201 I 201
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 34.3 bits (75), Expect = 0.12
Identities = 27/101 (26%), Positives = 28/101 (27%)
Frame = -1
Query: 892 GXGXXTAGXXXXXXXGXXXSXGGXXXGATXXXGGXGXXXXWGGXGXXXXXXXXXRRGXXX 713
G G G G GG G GG G GG G G
Sbjct: 95 GQGGYGGGGDFGGGMGGGGYGGGGYGGGGDGGGGYGGYGG-GGYGGMGGGPGGYGMGGYG 153
Query: 712 GGAGPGAXEXXXGXGXLEXXXXXREGXXXLAXGGFGWXGXG 590
GG G G G G + G GGFG G G
Sbjct: 154 GGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMG 194
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +3
Query: 669 PXPXXXSXAPGPAPPXXXPRLXXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPP 830
P P P P P P P PP P PP AP PP
Sbjct: 66 PPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPP 119
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 30.7 bits (66), Expect = 1.5
Identities = 26/104 (25%), Positives = 30/104 (28%), Gaps = 3/104 (2%)
Frame = -1
Query: 892 GXGXXTAGXXXXXXXGXXXSXGGXXXGATXXXGGXGXXXXW---GGXGXXXXXXXXXRRG 722
G G G G + GG G GG W GG G ++G
Sbjct: 183 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQG 242
Query: 721 XXXGGAGPGAXEXXXGXGXLEXXXXXREGXXXLAXGGFGWXGXG 590
GG G G G + G GG GW G G
Sbjct: 243 --GGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGWGGQG 284
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 30.7 bits (66), Expect = 1.5
Identities = 26/104 (25%), Positives = 30/104 (28%), Gaps = 3/104 (2%)
Frame = -1
Query: 892 GXGXXTAGXXXXXXXGXXXSXGGXXXGATXXXGGXGXXXXW---GGXGXXXXXXXXXRRG 722
G G G G + GG G GG W GG G ++G
Sbjct: 221 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQG 280
Query: 721 XXXGGAGPGAXEXXXGXGXLEXXXXXREGXXXLAXGGFGWXGXG 590
GG G G G + G GG GW G G
Sbjct: 281 --GGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGWGGQG 322
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/73 (27%), Positives = 20/73 (27%)
Frame = -1
Query: 892 GXGXXTAGXXXXXXXGXXXSXGGXXXGATXXXGGXGXXXXWGGXGXXXXXXXXXRRGXXX 713
G G G G GG G G WGG G R G
Sbjct: 117 GGGNNDGGWGGNNGGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGGGGG 176
Query: 712 GGAGPGAXEXXXG 674
GGAG E G
Sbjct: 177 GGAGERIAEGVLG 189
>U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein.
Length = 415
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 128 VGRLLGPKGNTMKQLQEDT 184
VG ++GPKG T+K++Q+DT
Sbjct: 148 VGLVVGPKGATIKRIQQDT 166
>AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess
protein 3, isoform a protein.
Length = 415
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 128 VGRLLGPKGNTMKQLQEDT 184
VG ++GPKG T+K++Q+DT
Sbjct: 148 VGLVVGPKGATIKRIQQDT 166
>AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess
protein 3, isoform b protein.
Length = 443
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 128 VGRLLGPKGNTMKQLQEDT 184
VG ++GPKG T+K++Q+DT
Sbjct: 176 VGLVVGPKGATIKRIQQDT 194
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/54 (29%), Positives = 17/54 (31%)
Frame = +3
Query: 669 PXPXXXSXAPGPAPPXXXPRLXXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPP 830
P P PG PP PR P PP P P + P PP
Sbjct: 335 PPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAP-PSGHGMIPPPPPP 387
>Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical
protein C14B1.6 protein.
Length = 793
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 222 LIEPLPSTAILHSVSSCNCFIVFPF 148
L+EP+ I H V CNC++ PF
Sbjct: 746 LLEPIYRAYINHFVDECNCYLKGPF 770
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/54 (29%), Positives = 17/54 (31%)
Frame = +3
Query: 669 PXPXXXSXAPGPAPPXXXPRLXXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPP 830
P P PG PP PR P PP P P + P PP
Sbjct: 345 PPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAP-PSGHGMIPPPPPP 397
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical
protein F33A8.9 protein.
Length = 346
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/52 (26%), Positives = 16/52 (30%)
Frame = +2
Query: 707 PPXXPAPPXXXSXPXXXPPAAPXXXXAXXSSXXRGAXXXSPXAXPXPPXXXP 862
PP P PP P P P + RG S + P P P
Sbjct: 236 PPGPPGPPGPPGNPGGIGPRGPPGDPGIMTQDSRGVEGPSGPSGPPGPMGFP 287
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = +3
Query: 660 SSXPXPXXXSXAPGPAPPXXXPRLXXXXXXXXXPXPPQXXXXPXPPXXXVAPXXXPP 830
S P P P APP P PP P PP + P PP
Sbjct: 24 SMGPPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPP 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,465,373
Number of Sequences: 27780
Number of extensions: 300083
Number of successful extensions: 1311
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -