Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D01
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.9  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   8.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   8.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   8.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 447 VRSAPLTSISXICDIHT 397
           VRS  LTS+  + D+HT
Sbjct: 32  VRSRTLTSLGDLSDVHT 48


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = +3

Query: 30  PRTQNMWMCSVTNQPKSQLKFLCQLRNILNSTLWED 137
           P+  N  M +     +  L+ LC +    + + WED
Sbjct: 59  PQAANKGMINQYGGEQPTLRLLCSIAGGTSESQWED 94


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 370 FFDFCKCICNSSVSLCWWCYGRYLNMK 290
           +FD C  + N++V++  +  G YL +K
Sbjct: 464 YFDKCDTLINNAVAVENFKGGMYLRLK 490


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 370 FFDFCKCICNSSVSLCWWCYGRYLNMK 290
           +FD C  + N++V++  +  G YL +K
Sbjct: 464 YFDKCDTLINNAVAVENFKGGMYLRLK 490


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,108
Number of Sequences: 438
Number of extensions: 4419
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)