Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C24
         (853 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   3.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   3.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   4.1  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   7.1  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   9.4  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   9.4  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 605 HLWIPKCRKIKFINKI 652
           H+W PKC ++    K+
Sbjct: 480 HIWTPKCERLARTEKL 495


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 605 HLWIPKCRKIKFINKI 652
           H+W PKC ++    K+
Sbjct: 480 HIWTPKCERLARTEKL 495


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 605 HLWIPKCRKIKFINKI 652
           H+W PKC ++    K+
Sbjct: 480 HIWTPKCERLARTEKL 495


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 605 HLWIPKCRKIKFINKI 652
           H+W PKC ++    K+
Sbjct: 480 HIWTPKCERLARTEKL 495


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 470 TAQTCGSGSHGHHHETA 520
           T+Q     SH HHH+T+
Sbjct: 124 TSQPPTDNSHVHHHQTS 140


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -2

Query: 693 CGNAYGCTSTSARVILLINLIFRHLGIHR*LSSWCRD 583
           CGN YGC     ++  ++   FR+      + +W  D
Sbjct: 373 CGNGYGCEHRWRQIFNMVG--FRNAVQGTGIENWWSD 407


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 678 GCTSTSARVILLINLIFRHLGIHR*LSSWCRDL 580
           GC     +    ++ +F+HL IHR   +W  +L
Sbjct: 69  GCVKCEQKQKEDVHKVFQHLMIHR--PNWWHEL 99


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 3   LLFFFSNTCLRVMLVMSDYD-TKIAL 77
           L+F F N    V+++MS+Y  T+I L
Sbjct: 97  LIFIFVNVFFWVIILMSNYAFTRIIL 122


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,188
Number of Sequences: 336
Number of extensions: 4338
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23555563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)