Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C24
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...   314   1e-86
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    29   0.84 
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    28   1.5  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   2.6  
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    27   4.5  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    26   5.9  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   5.9  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     26   5.9  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    26   7.8  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    26   7.8  

>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score =  314 bits (771), Expect = 1e-86
 Identities = 141/221 (63%), Positives = 177/221 (80%)
 Frame = +3

Query: 105 FKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRI 284
           FK I  +P    F+D++LS+TQRKTPTV+   +KISRIRGFY RKVK+TQ    ++L  I
Sbjct: 6   FKNITPIPDVNTFLDVVLSRTQRKTPTVIRSGFKISRIRGFYGRKVKFTQDTITEKLDSI 65

Query: 285 IQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYR 464
           +QEFPKL+D+HPF+ADL+N+LYD+DH K+ L QL+TA+HL++NVA+DY+RLLKYGDSLYR
Sbjct: 66  LQEFPKLNDIHPFHADLLNILYDRDHLKIALSQLSTAKHLVENVARDYIRLLKYGDSLYR 125

Query: 465 CKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSLL 644
           CKQLKRAALGRMATI+KRQ ++L +LEQVRQHL+RLP+IDP TRT+++CG+PNVGKSS +
Sbjct: 126 CKQLKRAALGRMATIIKRQKSSLEFLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFM 185

Query: 645 IK*HVLMWKCSHMRXHKXXLYVGHTDYKYLRWQVIDTPXIL 767
            K                 L+VGH DYKYLRWQVIDTP IL
Sbjct: 186 NKVTRAQVDVQPYAFTTKSLFVGHFDYKYLRWQVIDTPGIL 226


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = +3

Query: 60  DTKIALN*NKMSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRK 239
           +TK+ LN  ++S+  FKK   +  A D      +K   + P V+++H        F +  
Sbjct: 298 ETKVYLNNERISISGFKKYVEMYLASD------TKPDEEPPRVIYEHVNDRWDVAFAVSD 351

Query: 240 VKYTQQNFHDRLSRI 284
            ++ Q +F + +S I
Sbjct: 352 GQFKQVSFVNNISTI 366


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +3

Query: 468 KQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSLL 644
           K LKR  LG  AT +   GAN+        H    P  DP  +T+++ G    G +S+L
Sbjct: 53  KILKRTTLGLFATAVVLYGANVYRFRHPDPH---QPLPDPSKKTLVVLG-AGWGATSIL 107


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 111  KIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGF 227
            KI VV   +  +  + S+ QRK  +++ KH  I  + GF
Sbjct: 1670 KIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGF 1708


>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 227 KPTYS*YFIMLVNDCRSFPLCFR*N 153
           +PTY+ YFI L++D R    C+  N
Sbjct: 95  RPTYTHYFIRLLHDKRLLQKCYTQN 119


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
 Frame = +3

Query: 87  KMSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIR-KVKYTQQNF 263
           K++   FK IA   +   F+D  +S   R   T   +  +++   GF     +K +   F
Sbjct: 547 KINTTTFKTIANNKSVDAFLDDCVSFFSRPEMT---QDSQLNASSGFLTNFSLKDSTDRF 603

Query: 264 HDRLS--RIIQEFPKLDDVHPFYADLMNVL 347
           +  LS  ++ + F K+DD +  Y+D+ + L
Sbjct: 604 YKVLSYEKVSERFVKIDDSYITYSDIFSPL 633


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = +3

Query: 207 ISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQL 386
           +S IR    R+ K    +    LSR I +  KLD V PF   +M +L D+ +  + +  L
Sbjct: 437 LSTIRHVNTRESKINALSLVQILSRNICDESKLDTVLPF---VMTLLRDQ-YADVRISAL 492

Query: 387 NTARHLIDNV 416
            T   L+ NV
Sbjct: 493 ITITRLVSNV 502


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +3

Query: 597 TIIICGFPNVGKSSLLIK*HVLMWKCSHMRXHKXXLYVGHTDYKYLRWQVIDTPXIL 767
           T+   GFP+VGKS+L+ +      + +           G   Y   + Q++D P I+
Sbjct: 65  TVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNGAKIQILDLPGII 121


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 540 LEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSLL 644
           L Q+ +  A L S D    ++ + GFPN GKSS++
Sbjct: 294 LIQILRQFASLHS-DKKQISVGLIGFPNAGKSSII 327


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 597 TIIICGFPNVGKSSLL 644
           T+ + G+PNVGKSS++
Sbjct: 271 TVGVIGYPNVGKSSVI 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,542,073
Number of Sequences: 5004
Number of extensions: 73849
Number of successful extensions: 208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)