Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_C24
(853 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0668 - 4882174-4884204 327 6e-90
07_01_0075 - 558829-560859 324 5e-89
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 66 3e-11
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 31 0.88
01_03_0056 + 12089404-12090300,12090429-12090581,12090999-120911... 30 2.7
08_02_1310 - 26037025-26038074 29 6.2
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522... 29 6.2
05_03_0671 + 16831185-16831254,16832017-16832084,16832318-168323... 28 8.2
>06_01_0668 - 4882174-4884204
Length = 676
Score = 327 bits (804), Expect = 6e-90
Identities = 152/226 (67%), Positives = 182/226 (80%)
Frame = +3
Query: 90 MSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 269
M YNFK+I VVP KDFIDIILS+TQR+TPTVVHK Y ISRIR FY+RKVKYTQ NF++
Sbjct: 1 MVQYNFKRITVVPPGKDFIDIILSRTQRQTPTVVHKGYSISRIRQFYMRKVKYTQSNFYE 60
Query: 270 RLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG 449
+LS +I +FP+LDD+HPFY DL++VLY+KDHYKL LGQ+NTAR++I +AKDY+RLLKYG
Sbjct: 61 KLSTVIDDFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNIIAKIAKDYLRLLKYG 120
Query: 450 DSLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVG 629
DSLYRCK LK AALGRM T++KR +L YLEQ+RQH+ARLPSIDP TRT++ICG+PNVG
Sbjct: 121 DSLYRCKCLKVAALGRMCTVIKRISPSLAYLEQIRQHMARLPSIDPNTRTLLICGYPNVG 180
Query: 630 KSSLLIK*HVLMWKCSHMRXHKXXLYVGHTDYKYLRWQVIDTPXIL 767
KSS + K L+VGH DYKYLR+QVIDTP IL
Sbjct: 181 KSSFMNKITRADVDVQPYAFTTKSLFVGHADYKYLRYQVIDTPGIL 226
>07_01_0075 - 558829-560859
Length = 676
Score = 324 bits (796), Expect = 5e-89
Identities = 151/226 (66%), Positives = 181/226 (80%)
Frame = +3
Query: 90 MSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 269
M YNFK+I VVP KDFIDIILS+TQR+TPTVVHK Y ISRIR FY+RKVKYTQ NF++
Sbjct: 1 MVQYNFKRITVVPPGKDFIDIILSRTQRQTPTVVHKGYAISRIRQFYMRKVKYTQSNFYE 60
Query: 270 RLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG 449
+LS +I +FP+LD +HPFY DL++VLY+KDHYKL LGQ+NTAR++I +AKDY+RLLKYG
Sbjct: 61 KLSTVIDDFPRLDGIHPFYGDLLHVLYNKDHYKLALGQINTARNIIAKIAKDYLRLLKYG 120
Query: 450 DSLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVG 629
DSLYRCK LK AALGRM T++KR +L YLEQ+RQH+ARLPSIDP TRT++ICG+PNVG
Sbjct: 121 DSLYRCKCLKVAALGRMCTVIKRISPSLAYLEQIRQHMARLPSIDPNTRTLLICGYPNVG 180
Query: 630 KSSLLIK*HVLMWKCSHMRXHKXXLYVGHTDYKYLRWQVIDTPXIL 767
KSS + K L+VGH DYKYLR+QVIDTP IL
Sbjct: 181 KSSFMNKITRADVDVQPYAFTTKSLFVGHADYKYLRYQVIDTPGIL 226
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 66.5 bits (155), Expect = 3e-11
Identities = 57/225 (25%), Positives = 107/225 (47%), Gaps = 4/225 (1%)
Frame = +3
Query: 105 FKKIAVVPTAKDFIDIILSKTQRKTPTV-VHKHYKISRIRGFYIRKVKYTQQNFHDRLSR 281
F++I +V A D + K++ PT + K R +G +++ + L
Sbjct: 83 FQRIPMVMPATDILMSAQRKSRNVPPTKGIANIAKRERNKG--AKQLDALMKEISVPLRT 140
Query: 282 IIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLY 461
+ FPK D+HP+ L+ + + + +Y+ + +++ R I++V K + + SL
Sbjct: 141 YTENFPKRRDLHPYERSLIELTFGEGYYEKVIARVDALRKKINSVGKQHASVC--AKSLT 198
Query: 462 RCKQLKRAALGR--MATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKS 635
+ + +R + GR + + + L + + L +P +DP+ T+ + G PNVGKS
Sbjct: 199 KREAEERLSEGRKKLEEAFEHGKWVIDDLVNIAKTLRSMPVVDPHIPTLCLVGSPNVGKS 258
Query: 636 SLL-IK*HVLMWKCSHMRXHKXXLYVGHTDYKYLRWQVIDTPXIL 767
SL+ I CS+ + L +GH + R+QV DTP +L
Sbjct: 259 SLVRILSSGKPEVCSYPFTTRGIL-MGHIVSNHERFQVTDTPGLL 302
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 31.5 bits (68), Expect = 0.88
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 597 TIIICGFPNVGKSSLLIK*HVLMWKCS 677
T+I+ G PNVGKS+L + H L CS
Sbjct: 84 TVILVGRPNVGKSALFNRVHCLPLSCS 110
>01_03_0056 +
12089404-12090300,12090429-12090581,12090999-12091157,
12091575-12091734,12092185-12092201,12092682-12092798,
12092914-12093303
Length = 630
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +3
Query: 195 KHYK--ISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYK 368
K YK +S G+Y+ KV + +S + FP +D P ++ N L+D+ K
Sbjct: 423 KRYKELLSDSEGYYVPKVIDELSSKKVLMSEFVPGFP-IDKTDPNWS---NFLFDEPTRK 478
Query: 369 LGLGQLNTARHLIDNVAKDYVRLL 440
L AR DY+R++
Sbjct: 479 FNLIDFGAARDFPKRFVDDYLRMV 502
>08_02_1310 - 26037025-26038074
Length = 349
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 339 NVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMA 503
++L + Y+LG +L + + L+DNV + V + Y C +LK+ L +A
Sbjct: 260 HLLAAAERYELGGLKLLSTKKLLDNVTPENVAGIIVCAETYGCPELKKKCLDYLA 314
>04_04_1624 - 34849385-34849410,34849748-34851052,34852121-34852294,
34852386-34852456,34852563-34852618,34853047-34853185,
34853310-34853695,34853801-34853851,34853936-34854021,
34854112-34854553,34856241-34856315,34856457-34856593,
34856679-34856838,34856917-34857012,34857093-34857247,
34857900-34858032
Length = 1163
Score = 28.7 bits (61), Expect = 6.2
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Frame = -2
Query: 840 GFEMSPKXXPALHXYNIGXFQWXIPR---XQGCLSPAISNICNQ--YDQHTXLXCGNAYG 676
G +++P PAL G +W +P+ + L I +C Q D G+ Y
Sbjct: 1057 GTKVTPAPAPALAPAEDGRRRWCVPKPAADEVALQVNIDFVCGQGGIDCGAIRAGGSCYD 1116
Query: 675 CTSTSARVILLINLIFRHLGIH 610
+ A +NL F+ G H
Sbjct: 1117 PNNVQAHAAFAMNLYFQSNGQH 1138
>05_03_0671 +
16831185-16831254,16832017-16832084,16832318-16832394,
16832910-16833090,16833192-16833248,16834182-16834256,
16834820-16834939,16835018-16835224
Length = 284
Score = 28.3 bits (60), Expect = 8.2
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = +3
Query: 600 IIICGFPNVGKSSLLIK*HVLMWKCSHMRXHKXXLYVGHTDYKYLRWQVIDTPXILGXSI 779
+ + GFP+VGKS+LL + + G Y + Q++D P I+
Sbjct: 65 VALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGIIQYNDTKIQLLDLPGIIE--- 121
Query: 780 GXTQCYXNARRVXALGSSQSL 842
G ++ R+V A+ S L
Sbjct: 122 GASEGKGRGRQVIAVAKSSDL 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,424,300
Number of Sequences: 37544
Number of extensions: 463923
Number of successful extensions: 1052
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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