Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C24
         (853 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)              153   2e-37
SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)                   33   0.29 
SB_6380| Best HMM Match : MFS_1 (HMM E-Value=0.88)                     30   2.7  
SB_43986| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_7100| Best HMM Match : zf-DBF (HMM E-Value=2.6e-09)                 29   3.6  
SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)         28   8.4  

>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score =  153 bits (370), Expect = 2e-37
 Identities = 84/157 (53%), Positives = 97/157 (61%)
 Frame = +3

Query: 297 PKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQL 476
           P   DVHPFYADLMNVLYDKDHYKL LGQ+NTAR+LID +                C  +
Sbjct: 13  PTAKDVHPFYADLMNVLYDKDHYKLALGQINTARNLIDKM----------------CTIM 56

Query: 477 KRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSLLIK*H 656
           K            RQ  +L YLEQVRQHL+RLPSIDP TRT+++CGFPNVGKSS + K  
Sbjct: 57  K------------RQNQSLQYLEQVRQHLSRLPSIDPNTRTLLVCGFPNVGKSSFMNKVT 104

Query: 657 VLMWKCSHMRXHKXXLYVGHTDYKYLRWQVIDTPXIL 767
                          L+VGH DYKYLRWQV+DTP +L
Sbjct: 105 RADVDVQPYAFTTKSLFVGHMDYKYLRWQVVDTPGVL 141



 Score = 32.7 bits (71), Expect = 0.39
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 90  MSLYNFKKIAVVPTAKD 140
           M+ YNFKKI VVPTAKD
Sbjct: 1   MAHYNFKKITVVPTAKD 17


>SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)
          Length = 365

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 23/81 (28%), Positives = 35/81 (43%)
 Frame = +3

Query: 600 IIICGFPNVGKSSLLIK*HVLMWKCSHMRXHKXXLYVGHTDYKYLRWQVIDTPXILGXSI 779
           + + GFP+VGKS+LL K       C+           G  +Y     Q++D P I+    
Sbjct: 66  VALIGFPSVGKSTLLTKLTQTQSACASYEFTTLTCIPGVINYNGANIQLLDLPGIIE--- 122

Query: 780 GXTQCYXNARRVXALGSSQSL 842
           G  Q     R+V A+  +  L
Sbjct: 123 GAAQGKGRGRQVIAVARTADL 143


>SB_6380| Best HMM Match : MFS_1 (HMM E-Value=0.88)
          Length = 715

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -2

Query: 789 GXFQWX-IPRXQGCLSPAISNICN-QYDQH--TXLXCGNAYGCTST 664
           G F++  + R +  L   ++N+CN QY     T L CG A+GC  T
Sbjct: 498 GLFEFEDVKRDETTLLQGLNNLCNIQYLYFILTMLFCGGAFGCLQT 543


>SB_43986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = +3

Query: 483 AALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTR--TIIICGFPN 623
           + LG++   ++   AN  Y+E+++   A+L S++ YTR  +I I G P+
Sbjct: 68  STLGKLVVRVEENAANEEYIEKLK---AKLDSLEQYTRKNSIEIAGMPS 113


>SB_7100| Best HMM Match : zf-DBF (HMM E-Value=2.6e-09)
          Length = 242

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
 Frame = +3

Query: 123 VPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPK 302
           V +A+DF+    S T R         +++ ++RG +I KV+   +N+   L + ++ +P+
Sbjct: 66  VISAEDFLKWAESNTSRAGTGKRQASHRVRKLRGAFI-KVEDQSRNYRP-LFKEMKSWPR 123

Query: 303 LD-DVHPFYADLMNVLYDKDHYKLGLGQLNTARHLI 407
           L+ D  P Y    +V   K   K    +   AR  +
Sbjct: 124 LNFDAPPGYGPFDDVTAPKTRAKSSSSEPRQARKCV 159


>SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1061

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = +3

Query: 369 LGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMATIMKRQGANLTYLEQ 548
           LGLGQ+  AR  ++N ++ + ++LK     Y   ++  +     + ++KR+ A     + 
Sbjct: 277 LGLGQMYIARRDLNNASQCFEKVLKAMPGNYETMKILGSLYSPSSDLVKRELARQHLKKV 336

Query: 549 VRQH 560
             QH
Sbjct: 337 TEQH 340


>SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)
          Length = 879

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +1

Query: 178 LLQSFTSIIKYQEYVGFILEK*NIPSRTSTTDCPEL 285
           L++S+  IIK QE  GFI EK   PS  S  DC E+
Sbjct: 534 LMKSYDDIIKEQEARGFI-EK--APSTPSLNDCLEV 566


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,430,961
Number of Sequences: 59808
Number of extensions: 541470
Number of successful extensions: 1062
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)