Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C24
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50920.1 68414.m05725 GTP-binding protein-related similar to ...   326   1e-89
At1g10300.1 68414.m01160 GTP-binding protein-related contains si...   299   1e-81
At3g23860.1 68416.m02999 GTP-binding protein-related low similar...    75   6e-14
At1g80770.1 68414.m09476 expressed protein                             71   1e-12
At3g10830.1 68416.m01304 hypothetical protein                          39   0.005
At3g09660.1 68416.m01145 minichromosome maintenance family prote...    33   0.32 
At4g32500.1 68417.m04626 potassium channel protein, putative sim...    29   3.0  
At4g01560.1 68417.m00202 brix domain-containing protein contains...    29   3.0  
At4g35170.1 68417.m05000 hypothetical protein predicted protein,...    28   6.9  
At3g15510.1 68416.m01966 no apical meristem (NAM) family protein...    28   6.9  
At1g72660.1 68414.m08403 developmentally regulated GTP-binding p...    28   9.1  
At1g17470.1 68414.m02143 developmentally regulated GTP-binding p...    28   9.1  

>At1g50920.1 68414.m05725 GTP-binding protein-related similar to
           GTP-binding protein SP:Q99ME9 from [Mus musculus]
          Length = 671

 Score =  326 bits (800), Expect = 1e-89
 Identities = 151/226 (66%), Positives = 182/226 (80%)
 Frame = +3

Query: 90  MSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 269
           M  YNFK+I VVP  K+F+DIILS+TQR+TPTVVHK YKI+R+R FY+RKVKYTQ NFH 
Sbjct: 1   MVQYNFKRITVVPNGKEFVDIILSRTQRQTPTVVHKGYKINRLRQFYMRKVKYTQTNFHA 60

Query: 270 RLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG 449
           +LS II EFP+L+ +HPFY DL++VLY+KDHYKL LGQ+NTAR+LI  ++KDYV+LLKYG
Sbjct: 61  KLSAIIDEFPRLEQIHPFYGDLLHVLYNKDHYKLALGQVNTARNLISKISKDYVKLLKYG 120

Query: 450 DSLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVG 629
           DSLYRCK LK AALGRM T++KR   +L YLEQ+RQH+ARLPSIDP TRT++ICG+PNVG
Sbjct: 121 DSLYRCKCLKVAALGRMCTVLKRITPSLAYLEQIRQHMARLPSIDPNTRTVLICGYPNVG 180

Query: 630 KSSLLIK*HVLMWKCSHMRXHKXXLYVGHTDYKYLRWQVIDTPXIL 767
           KSS + K                 L+VGHTDYKYLR+QVIDTP IL
Sbjct: 181 KSSFMNKVTRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGIL 226


>At1g10300.1 68414.m01160 GTP-binding protein-related contains
           similarity to nucleolar GTP-binding protein 1 SP: Q9BZE4
           from [Homo sapiens];
          Length = 687

 Score =  299 bits (735), Expect = 1e-81
 Identities = 141/230 (61%), Positives = 176/230 (76%)
 Frame = +3

Query: 90  MSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 269
           M  YNFKKI VVP  K F+DI+LS+TQR+TPTVVHK  +I ++R FY+RKVK+T+ NF++
Sbjct: 30  MVKYNFKKITVVPNGKQFVDIVLSRTQRQTPTVVHKGDRICKLRSFYMRKVKFTESNFNE 89

Query: 270 RLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG 449
           +LS II EFP+L ++ PFY DL++VLY+KDHYKL LGQ+NTA++ I  +A DYV+LLK+G
Sbjct: 90  KLSAIIDEFPRLKEIQPFYEDLLHVLYNKDHYKLALGQVNTAKNKISKIAMDYVKLLKHG 149

Query: 450 DSLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVG 629
           DSLYRCK LK AALGRM T+MK  G +L YLEQVRQH+ARLPSIDP TRT++ICG PNVG
Sbjct: 150 DSLYRCKCLKVAALGRMCTVMKGIGPSLAYLEQVRQHIARLPSIDPNTRTLLICGCPNVG 209

Query: 630 KSSLLIK*HVLMWKCSHMRXHKXXLYVGHTDYKYLRWQVIDTPXILGXSI 779
           KSS + K                 L++GHTDYK LR+QVIDTP +L   I
Sbjct: 210 KSSFMNKVTRADVAVQPYAFTTKSLFLGHTDYKCLRYQVIDTPGLLDREI 259


>At3g23860.1 68416.m02999 GTP-binding protein-related low similarity
           to SP|Q99ME9 Nucleolar GTP-binding protein 1 (Chronic
           renal failure gene protein) {Mus musculus}
          Length = 230

 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 7/161 (4%)
 Frame = +3

Query: 105 FKKI-AVVPTAKDFIDIILSKTQRKTPTVVHK---HYKISRIRGFYIRKVKYTQQNFHDR 272
           FKKI AVVPT  DF   I  + Q    T++     H  IS IR  Y  KV        ++
Sbjct: 6   FKKISAVVPTELDFDRAIRFEYQIPNCTLIPDRVCHDDISDIRQKYAVKVMSAGTTLSNK 65

Query: 273 LSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG- 449
           L+ ++ EFP +  + P YA L++  Y+  HY   + Q++  + L++ ++ +YV LL+   
Sbjct: 66  LNDVLHEFPCVRHLDPVYASLLHQRYNMYHYDRAVRQVSVTQTLVNVMSFNYVDLLRKDD 125

Query: 450 --DSLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLA 566
             DS  +C+ L   AL RM T  K     L  L+QVR+ +A
Sbjct: 126 DCDSRDKCRSLGVTALARMLTFAKSCIPALNLLDQVREFMA 166


>At1g80770.1 68414.m09476 expressed protein
          Length = 451

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 1/222 (0%)
 Frame = +3

Query: 105 FKKIAVVPTAKDFIDIILSKTQRKTPTV-VHKHYKISRIRGFYIRKVKYTQQNFHDRLSR 281
           F+K+ +V  + D     L K++R  PT  +    K  R RG   +++    +     L  
Sbjct: 92  FQKLPMVMPSIDLYASALRKSKRVQPTKGIANIAKRERNRG--AKQLDAFMKELALPLKG 149

Query: 282 IIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLY 461
            ++ FP+   +HP+   L+++      Y+  LG+++  R  + +V K++  L     S  
Sbjct: 150 YMESFPRKKLLHPYERSLIDLTLGDGKYEEVLGKVDVLRKKVQSVGKEHASLCAKALSKK 209

Query: 462 RCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSL 641
             ++     + ++  + ++QG  +  L  + + L  +P +D    T+ + G PNVGKSSL
Sbjct: 210 EAEERLSEGVEKLELVFQQQGGAVDDLLTIAKVLRAMPVVDLEMPTLCLVGAPNVGKSSL 269

Query: 642 LIK*HVLMWKCSHMRXHKXXLYVGHTDYKYLRWQVIDTPXIL 767
           +        +  +       + +GH    Y R+QV DTP +L
Sbjct: 270 VRILSTGKPEICNYPFTTRGILMGHIVLNYQRFQVTDTPGLL 311


>At3g10830.1 68416.m01304 hypothetical protein 
          Length = 147

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
 Frame = +3

Query: 105 FKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHY------KISRIRGFYIRKVKYTQQNFH 266
           FKK++V+ T KDF+D I+S + +     +   +      K   I    +  V+   + F 
Sbjct: 27  FKKMSVLLTEKDFVDAIVSVSLKDLTRSLFVRFEAKACPKFDLIHKTSVETVRCVGKTFM 86

Query: 267 DRLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQL 386
             LS++ +EFP  +  HP    L+   +D  H  L   Q+
Sbjct: 87  HMLSKVSREFPPRNRTHP--GGLLYQRFDPTHLSLARQQV 124


>At3g09660.1 68416.m01145 minichromosome maintenance family protein
           / MCM family protein similar to SP|P49717 DNA
           replication licensing factor MCM4 (CDC21 homolog) {Mus
           musculus}; contains Pfam profile PF00493: MCM2/3/5
           family
          Length = 777

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
 Frame = +3

Query: 273 LSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLI----------DNVAK 422
           LS  +Q+F K+ D+  F+ +L      +D+ K  +  +N A H +          +NV K
Sbjct: 77  LSLDLQQFKKISDIENFFINL------EDNPKGVIPCMNAAVHKVLFDQWETNEFENVMK 130

Query: 423 DYVRLLKYGDSLYRCKQLKRAALGRMATI 509
             VRL  Y +S    K L+ A +G++ T+
Sbjct: 131 INVRLHNYPESSISLKNLRAAYIGKLVTV 159


>At4g32500.1 68417.m04626 potassium channel protein, putative
           similar to potassium channel [Solanum tuberosum]
           gi|1514649|emb|CAA60016; similar to AKT1 [Arabidopsis
           thaliana] gi|563112|gb|AAA96810; member of the 1 pore, 6
           transmembrane (1P/6TM- Shaker-type) K+ channel family,
           PMID:11500563
          Length = 880

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 372 GLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMAT-IMKRQGANLTYLEQ 548
           G+G +  AR  I   A    +++K  DSL    ++    LG +AT I+ R+GA +  +  
Sbjct: 808 GVGGVYPARVTISGEASSSGKVVKLPDSLEELIEIGEKKLGFVATKILSREGAEIDDIRI 867

Query: 549 VR 554
           +R
Sbjct: 868 IR 869


>At4g01560.1 68417.m00202 brix domain-containing protein contains
           Pfam domain, PF04427: Brix domain
          Length = 343

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 87  KMSLYNFKKIAVVPTAKDFIDIILSKTQRKTP 182
           K   Y+ KKI    T KDF  +I+  T R+ P
Sbjct: 159 KRGTYDLKKIVEYATKKDFTSLIVVHTNRREP 190


>At4g35170.1 68417.m05000 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 163

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +2

Query: 485 GSGSHGHHHETARS*SYIPGTGP-----STFSTFTIDRSLHQDDNH 607
           G  S+  HH  A S SY   +GP     S+     +DR  H+D+++
Sbjct: 48  GQVSNFQHHSVAESSSYPRSSGPLRNEYSSVQVHDLDRRTHEDEDY 93


>At3g15510.1 68416.m01966 no apical meristem (NAM) family protein
           (NAC2) identical to AtNAC2 [Arabidopsis thaliana]
           GI:12060426; contains Pfam PF02365: No apical meristem
           (NAM) domain; similar to jasmonic acid 2 GB:AAF04915
           from [Lycopersicon esculentum]
          Length = 364

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 443 IWRFVVSVQTAQTCGSGSHGHHHETARS*SYIPG 544
           I+R +    +     +G H HHH  +RS ++ PG
Sbjct: 197 IFRKIPPSLSMAAASTGLHQHHHNVSRSMNFFPG 230


>At1g72660.1 68414.m08403 developmentally regulated GTP-binding
           protein, putative very strong similarity to
           developmentally regulated GTP binding protein (DRG1)
           [Arabidopsis thaliana] GI:2345150
          Length = 399

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/81 (25%), Positives = 35/81 (43%)
 Frame = +3

Query: 600 IIICGFPNVGKSSLLIK*HVLMWKCSHMRXHKXXLYVGHTDYKYLRWQVIDTPXILGXSI 779
           + + GFP+VGKS+LL        + +           G   Y   + Q++D P I+    
Sbjct: 65  VALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPGIIE--- 121

Query: 780 GXTQCYXNARRVXALGSSQSL 842
           G ++     R+V A+  S  L
Sbjct: 122 GASEGKGRGRQVIAVAKSSDL 142


>At1g17470.1 68414.m02143 developmentally regulated GTP-binding
           protein (DRG1) identical to developmentally regulated
           GTP binding protein (DRG1) [Arabidopsis thaliana]
           GI:2345150
          Length = 399

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/81 (25%), Positives = 35/81 (43%)
 Frame = +3

Query: 600 IIICGFPNVGKSSLLIK*HVLMWKCSHMRXHKXXLYVGHTDYKYLRWQVIDTPXILGXSI 779
           + + GFP+VGKS+LL        + +           G   Y   + Q++D P I+    
Sbjct: 65  VALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPGIIE--- 121

Query: 780 GXTQCYXNARRVXALGSSQSL 842
           G ++     R+V A+  S  L
Sbjct: 122 GASEGKGRGRQVIAVAKSSDL 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,285,676
Number of Sequences: 28952
Number of extensions: 381332
Number of successful extensions: 886
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)