Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C23
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac...    62   9e-11
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...    56   5e-09
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc...    51   2e-07
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    48   2e-06
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz...    37   0.003
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch...    35   0.012
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    34   0.022
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    33   0.050
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac...    33   0.050
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2...    31   0.20 
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch...    30   0.47 
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    29   0.62 
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch...    29   1.1  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    28   1.9  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    27   4.4  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   7.6  

>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
           Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 167

 Score = 62.1 bits (144), Expect = 9e-11
 Identities = 24/42 (57%), Positives = 31/42 (73%)
 Frame = +3

Query: 612 IRFLTKVWHPNVYENGDLCISILHPPXDDPQSGELPCERWNP 737
           ++F T++WHPNV+ NG++CISILHPP DD    E   ERW P
Sbjct: 72  MKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLP 113



 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 24/50 (48%), Positives = 34/50 (68%)
 Frame = +1

Query: 433 EYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKGTHEIP 582
           + K +Q+ P +GF V L+ + ++FEWEV I GP DTLY+GG+F  T   P
Sbjct: 13  QLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFP 62


>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
           Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 56.4 bits (130), Expect = 5e-09
 Identities = 22/42 (52%), Positives = 30/42 (71%)
 Frame = +3

Query: 612 IRFLTKVWHPNVYENGDLCISILHPPXDDPQSGELPCERWNP 737
           ++F  + +HPNVY++G +CISILH P DDP   E   ERW+P
Sbjct: 72  LKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSP 113



 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 433 EYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKGTHEIP 582
           EYK L E   +G       ED+ F W+  I GP  T ++GG +  T + P
Sbjct: 13  EYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFP 62


>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
           Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 25/51 (49%), Positives = 30/51 (58%)
 Frame = +1

Query: 433 EYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKGTHEIPP 585
           EY +LQ+ PVE    K   E N+ EW   I GPPDT Y+GG + GT   PP
Sbjct: 13  EYLALQKNPVELVDAKPATE-NILEWHYIITGPPDTPYEGGQYHGTLIFPP 62


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 21/50 (42%), Positives = 29/50 (58%)
 Frame = +1

Query: 433 EYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKGTHEIP 582
           EY  L+E P+   RV L+ +DNLF W     GP D++Y GG F  + + P
Sbjct: 15  EYSDLREHPIPDIRVNLV-DDNLFHWACTALGPSDSVYAGGKFHFSLKFP 63



 Score = 30.7 bits (66), Expect = 0.27
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 612 IRFLTKVWHPNVYENGDLCISIL 680
           I F T+++HPN    G++C++IL
Sbjct: 73  IEFTTRIYHPNFDSEGNVCLAIL 95


>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
           E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 12/23 (52%), Positives = 20/23 (86%)
 Frame = +3

Query: 612 IRFLTKVWHPNVYENGDLCISIL 680
           ++F++ ++HPNVY NG+LC+ IL
Sbjct: 70  VKFVSTMFHPNVYANGELCLDIL 92



 Score = 35.9 bits (79), Expect = 0.007
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 433 EYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFK 564
           ++K +Q++P  G     +  DN+  W   I GP DT ++ G FK
Sbjct: 12  DFKRMQQDPPAGVSASPVS-DNVMLWNAVIIGPADTPFEDGTFK 54


>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
           Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 35.1 bits (77), Expect = 0.012
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +3

Query: 612 IRFLTKVWHPNVYENGDLCISIL 680
           +RFLTK++HPNV + G +C+S L
Sbjct: 68  VRFLTKIYHPNVDKLGRICLSTL 90



 Score = 29.5 bits (63), Expect = 0.62
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 433 EYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYF 561
           E ++L  +P  G  V    EDNL  +++ + GP  + Y+GG F
Sbjct: 10  EIETLTRDPPPGI-VAAPTEDNLRYFKITMEGPQQSAYEGGKF 51


>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 34.3 bits (75), Expect = 0.022
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 433 EYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYF 561
           E   L ++P        +G+D LF W+  I GP D+ Y GG F
Sbjct: 9   ELADLGKDPPSSCSAGPVGDD-LFHWQATIMGPADSPYAGGVF 50



 Score = 34.3 bits (75), Expect = 0.022
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 612 IRFLTKVWHPNVYENGDLCISIL 680
           + F T+++HPN+  NG +C+ IL
Sbjct: 67  VNFTTRIYHPNINSNGSICLDIL 89


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 33.1 bits (72), Expect = 0.050
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +3

Query: 615 RFLTKVWHPNVYENGDLCISILH 683
           RF   ++HPNVY +G +C+SIL+
Sbjct: 76  RFTPPLFHPNVYPSGTVCLSILN 98



 Score = 29.5 bits (63), Expect = 0.62
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 496 NLFEWEVAIFGPPDTLYQGGYFKGTHEIP 582
           +L  W+V I G P T ++GG +K T   P
Sbjct: 37  DLMNWKVGIPGKPKTSWEGGLYKLTMAFP 65


>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
           Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 33.1 bits (72), Expect = 0.050
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 433 EYKSLQEEPVEGFRV-KLLGEDNLFEWEVAIFGPPDTLYQGG 555
           EY S Q   + G  + K + + ++F W+  I GP +T Y+GG
Sbjct: 11  EYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGG 52


>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 176

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 612 IRFLTKVWHPNVYENGDLCISIL 680
           I F + +WHPNV  +G++C+ IL
Sbjct: 95  IIFTSPMWHPNVDMSGNICLDIL 117



 Score = 30.7 bits (66), Expect = 0.27
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +1

Query: 433 EYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKGTHEIP 582
           E  SL      G       + NL  W   I GP DT Y+G  FK +   P
Sbjct: 36  ELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFP 85


>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
           Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 484 LGEDNLFEWEVAIFGPPDTLYQGGYFKGTHEIP 582
           L  DN+ E+ V   GP +T Y GG +K   E+P
Sbjct: 24  LVNDNMQEFYVRFHGPSETPYSGGIWKVHVELP 56



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/25 (32%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 612 IRFLTKVWHPNVYE-NGDLCISILH 683
           I F+ +++HPN+ E +G +C+ +++
Sbjct: 66  IGFVNRIFHPNIDELSGSVCLDVIN 90


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +3

Query: 612 IRFLTKVWHPNVYENGDLCISIL 680
           ++ L K++HPN+   G++C++IL
Sbjct: 87  VKCLNKIYHPNIDIEGNVCLNIL 109


>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
           Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 433 EYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKGTHEIP 582
           E   +Q++   G +V  + +D +   +    GP  T Y+GGYF    EIP
Sbjct: 12  ELADVQQDKQAGIQVWTINDD-ISHLKGMFRGPEGTPYEGGYFVVDIEIP 60



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 612 IRFLTKVWHPNV-YENGDLCISIL 680
           + F TK++HPNV  + G +C+ IL
Sbjct: 70  MNFDTKIYHPNVSSQTGAICLDIL 93


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 454 EPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQGGYFKG 567
           E ++G  +K +      +WEVAIFG P     G   KG
Sbjct: 186 EEIDGIGMKTVANKLNADWEVAIFGEPTENKLGVGHKG 223


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 235 LCLPKFLVRCYCDELKCLVDTWTA 306
           LC+ + LV C C    C+V +W A
Sbjct: 105 LCVNENLVVCGCSNSSCIVYSWNA 128


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -3

Query: 530 GPKIATSHSNRLSSPSN--LTRKPST 459
           GP+  TS SN  +SP+N   T KPST
Sbjct: 230 GPRPTTSASNTNTSPANGAPTNKPST 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,357,960
Number of Sequences: 5004
Number of extensions: 71507
Number of successful extensions: 180
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)