Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C21
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...   258   6e-70
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...   239   5e-64
SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz...    31   0.28 
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    30   0.37 
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    28   1.5  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    27   2.6  
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe...    27   3.5  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   6.0  

>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score =  258 bits (633), Expect = 6e-70
 Identities = 125/202 (61%), Positives = 154/202 (76%), Gaps = 1/202 (0%)
 Frame = +2

Query: 116 MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGK 295
           M I+ + ARQI+DSRGNPTVEVDL TE G+ RA VPSGASTG+ EALE+RD  K+++ GK
Sbjct: 1   MAIQKVFARQIYDSRGNPTVEVDLTTETGIHRAIVPSGASTGIWEALEMRDGDKTKWGGK 60

Query: 296 GVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXX 475
           GVL A+ N+N +IAP + KANL+VT Q+  DE +LKLDGTENKSKLGANAILGVS+    
Sbjct: 61  GVLKAVGNVNNIIAPAVVKANLDVTDQKAADEFLLKLDGTENKSKLGANAILGVSMAICR 120

Query: 476 XXXXXXNVPLYKHLADLAG-NNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFS 652
                  +PL+K++A+  G     VLPVP+FNV+NGGSHAG  LA QEFMI PTGA +FS
Sbjct: 121 AGAAQKKLPLWKYIAENFGTKGPYVLPVPSFNVLNGGSHAGGDLAFQEFMILPTGAPSFS 180

Query: 653 EAMRMGSEVYHHLKKIIKEKFG 718
           EAMR G+E YH LK I K+++G
Sbjct: 181 EAMRWGAETYHTLKSIAKKRYG 202


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score =  239 bits (584), Expect = 5e-64
 Identities = 114/200 (57%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
 Frame = +2

Query: 122 IKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGV 301
           I+ I +R I+DSRGNPTVEV+L TELG FR+ VPSGASTG  EA ELRDN K+++ GKGV
Sbjct: 4   IQKIYSRSIYDSRGNPTVEVELTTELGTFRSMVPSGASTGEWEAKELRDNDKNKWGGKGV 63

Query: 302 LTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXXX 481
             A+ N+N +I P L K+++++T QR IDE M+KLDGT +KSKLGAN+I+GVS+      
Sbjct: 64  TIAVHNVNNIIGPALVKSDIKITDQRGIDEFMIKLDGTNDKSKLGANSIVGVSMAVARAA 123

Query: 482 XXXXNVPLYKHLADLAGNNDI-VLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFSEA 658
                +PLY+++  LAG+     +PVP+FNV+NGG HAG  LA QEFMI P  A TFSE 
Sbjct: 124 AAFLKIPLYEYIGKLAGSKTTECIPVPSFNVLNGGRHAGGDLAFQEFMIMPIKAPTFSEG 183

Query: 659 MRMGSEVYHHLKKIIKEKFG 718
           +R GSEVYH LK + K+K+G
Sbjct: 184 LRWGSEVYHTLKALAKKKYG 203


>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 669 PILMASLKVDAPVGKIMNSCMASLFPACDPPLITLNAGTGRTMSL 535
           PI+  S  + + +G+ +N  +  LFP+CD  LI      G T+ L
Sbjct: 192 PIIQTSAPLGSSLGEFLNKRLPDLFPSCDKFLIVKPVIHGITIFL 236


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 17  NQILIFLPNPACKVQFC*IRISLNLRKSSSVLKMVIKSIKARQIFDS 157
           NQI ++   P+C V+   I I  N+ +S  V K +   +K   +FDS
Sbjct: 241 NQIYLYFSYPSCLVRVYSIGIIYNIYQSGFVNKKMESVVKGISLFDS 287


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = +2

Query: 152 DSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINEL 331
           D +G    +VD       ++A     +ST     LE R N + E     V TAI  + E 
Sbjct: 140 DEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDD-AVHTAILALKET 198

Query: 332 IAPELTKANLEV 367
              ELT+ N+E+
Sbjct: 199 FEGELTEDNIEI 210


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 460 PSCC*GWCCQEE 495
           PSCC G CC+EE
Sbjct: 490 PSCCGGHCCKEE 501


>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 396

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
 Frame = +2

Query: 89  LRKSSSVLKMVIKSIKARQIFDSRGNPTV-EVDLVTELGLFRAAVPSGASTGVHEALELR 265
           ++   +V+K  I SIK  ++ + +G  TV + D+ +  G    A   G  T +   +   
Sbjct: 171 MKGEMAVMKNDIASIKG-EMAEMKGEMTVMKNDIASIKG--EMAEMKGEMTIMKSDI--- 224

Query: 266 DNIKSEY-HGKGVLTAIKNINELIAPELTKANLEVTQQRE-IDELMLKLDGTENKSK 430
           D++K E    KG +T +KN  + +  E T    EVT  ++ I +L  K+D  + +++
Sbjct: 225 DSVKGEMAEMKGEMTIMKNDIDSVKGETTTLKGEVTAMKDSISQLDRKIDLLDQRTE 281


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 22/98 (22%), Positives = 42/98 (42%)
 Frame = +2

Query: 98   SSSVLKMVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIK 277
            +S V   VI++     +    G P +   ++  LG F +   S  S  +    ++ + + 
Sbjct: 1088 TSEVTLSVIRARPGLLVKMVDGEPILTQQVIQNLGGFSSEEVSMVSRCIRSRTQIMNMLA 1147

Query: 278  SEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDE 391
            +E H    +   K +NE +A  L + N E T   E+ +
Sbjct: 1148 TEIHYAASVGQNKYLNEYVA-SLIRTN-EKTHSTELSQ 1183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,360,664
Number of Sequences: 5004
Number of extensions: 64255
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)