Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C20
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   8.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 305 PNLDEISDVVVQPYNSLLTLKRLT--ESADCVMVLDNTALNRIASDRLHIQNP 457
           PNL   +   + PY+SLL++  L    S D   V  N A     + +L ++ P
Sbjct: 657 PNLASANISQLDPYSSLLSITNLAAEHSGDYTCVAANPAAEVRYTAKLQVKVP 709


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 563 PLIPTPRLHFLMTGYTPLSADHE 631
           P +PT     + + YTPL  DH+
Sbjct: 183 PPVPTVTSACVGSAYTPLKEDHD 205


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 413 LYYPEPSRSLH 381
           L YPEP+ SLH
Sbjct: 38  LVYPEPNPSLH 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,942
Number of Sequences: 438
Number of extensions: 4436
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)