Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_C20
(844 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 233 1e-61
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 231 6e-61
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 126 1e-29
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 126 1e-29
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 126 2e-29
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 126 2e-29
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 126 2e-29
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 124 6e-29
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 124 6e-29
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 124 6e-29
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 124 6e-29
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 108 5e-24
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 107 9e-24
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 107 9e-24
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 105 3e-23
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 105 3e-23
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 105 5e-23
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 105 5e-23
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 233 bits (570), Expect = 1e-61
Identities = 115/154 (74%), Positives = 130/154 (84%)
Frame = +2
Query: 230 GMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDN 409
GMGSY+LE L+DR+ KKLVQTYSVFPN E SDVVVQPYNSLLTLKRLT +ADCV+VLDN
Sbjct: 148 GMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDN 207
Query: 410 TALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLH 589
TALNRIA +RLH+ NP+FAQ N+LVST+MSAST TLRYP YMNNDL+ L+A LIPTPR H
Sbjct: 208 TALNRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCH 267
Query: 590 FLMTGYTPLSADHEQTAAPKIRKTTVLXXMXRLL 691
FLMTGYTPL+ + + A IRKTTVL M RLL
Sbjct: 268 FLMTGYTPLTVERQ---ANVIRKTTVLDVMRRLL 298
Score = 126 bits (304), Expect = 2e-29
Identities = 55/77 (71%), Positives = 64/77 (83%)
Frame = +1
Query: 7 IHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASGYAQGEKLNEEVFDIINREADGSDNLE 186
I+ I N Y LYN EN++LS HGGGAGNNWASGY QG+ + EE+ D+I+READGSD+LE
Sbjct: 74 INGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQGKGVEEEIMDMIDREADGSDSLE 133
Query: 187 GFVLCHSIAGGTGSGXG 237
GFVLCHSIAGGTGSG G
Sbjct: 134 GFVLCHSIAGGTGSGMG 150
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 744 YISXLNXIQGXVDPSQV 794
YIS LN IQG VDP+QV
Sbjct: 319 YISILNIIQGEVDPTQV 335
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 231 bits (564), Expect = 6e-61
Identities = 114/154 (74%), Positives = 129/154 (83%)
Frame = +2
Query: 230 GMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDN 409
GMGSY+LE L+DR+ KKLVQTYSVFPN E SDVVVQPYNSLLTLKRLT +ADCV+VLDN
Sbjct: 148 GMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDN 207
Query: 410 TALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLH 589
TAL RIA +RLH+ NP+FAQ N+LVST+MSAST TLRYP YMNNDL+ L+A LIPTPR H
Sbjct: 208 TALGRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCH 267
Query: 590 FLMTGYTPLSADHEQTAAPKIRKTTVLXXMXRLL 691
FLMTGYTPL+ + + A IRKTTVL M RLL
Sbjct: 268 FLMTGYTPLTVERQ---ANVIRKTTVLDVMRRLL 298
Score = 124 bits (298), Expect = 1e-28
Identities = 53/77 (68%), Positives = 64/77 (83%)
Frame = +1
Query: 7 IHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASGYAQGEKLNEEVFDIINREADGSDNLE 186
I+ I N Y LYN EN++++ HGGGAGNNWASGY QG+ + EE+ D+I+READGSD+LE
Sbjct: 74 INGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQGKGVEEEIMDMIDREADGSDSLE 133
Query: 187 GFVLCHSIAGGTGSGXG 237
GFVLCHSIAGGTGSG G
Sbjct: 134 GFVLCHSIAGGTGSGMG 150
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 744 YISXLNXIQGXVDPSQV 794
YIS LN IQG VDP+QV
Sbjct: 319 YISILNIIQGEVDPTQV 335
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 126 bits (305), Expect = 1e-29
Identities = 59/135 (43%), Positives = 88/135 (65%)
Frame = +2
Query: 230 GMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDN 409
GMG+ ++ + + +P +++ T+SVFP+ ++SD VV+PYN+ L++ +L E+AD MVLDN
Sbjct: 146 GMGTLLISKIREEYPDRMMMTFSVFPS-PKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 410 TALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLH 589
AL I L + NP+F +N L+S MS T LR+P +N+DL L LIP PRLH
Sbjct: 205 EALYDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLH 264
Query: 590 FLMTGYTPLSADHEQ 634
F M G+ PL++ Q
Sbjct: 265 FFMVGFAPLTSRGSQ 279
Score = 81.0 bits (191), Expect = 9e-16
Identities = 33/78 (42%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Frame = +1
Query: 13 TIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDIINREADGSDNLEG 189
++ + P+ +++ P+N + GAGNNWA G Y +G +L + V D++ +EA+ SD L+G
Sbjct: 75 SLRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENSDCLQG 132
Query: 190 FVLCHSIAGGTGSGXGLI 243
F +CHS+ GGTGSG G +
Sbjct: 133 FQVCHSLGGGTGSGMGTL 150
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 126 bits (305), Expect = 1e-29
Identities = 59/135 (43%), Positives = 88/135 (65%)
Frame = +2
Query: 230 GMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDN 409
GMG+ ++ + + +P +++ T+SVFP+ ++SD VV+PYN+ L++ +L E+AD MVLDN
Sbjct: 146 GMGTLLISKIREEYPDRMMMTFSVFPS-PKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 410 TALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLH 589
AL I L + NP+F +N L+S MS T LR+P +N+DL L LIP PRLH
Sbjct: 205 EALYDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLH 264
Query: 590 FLMTGYTPLSADHEQ 634
F M G+ PL++ Q
Sbjct: 265 FFMVGFAPLTSRGSQ 279
Score = 79.0 bits (186), Expect = 4e-15
Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = +1
Query: 13 TIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDIINREADGSDNLEG 189
++ + P+ +++ P+N + GAGNNWA G Y +G +L + V D++ +EA+ D L+G
Sbjct: 75 SLRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQG 132
Query: 190 FVLCHSIAGGTGSGXGLI 243
F +CHS+ GGTGSG G +
Sbjct: 133 FQVCHSLGGGTGSGMGTL 150
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 126 bits (303), Expect = 2e-29
Identities = 59/135 (43%), Positives = 87/135 (64%)
Frame = +2
Query: 230 GMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDN 409
GMG+ ++ + + +P +++ T+SVFP+ ++SD VV+PYN+ L++ +L E+AD MVLDN
Sbjct: 146 GMGTLLISKIREEYPDRMMMTFSVFPS-PKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 410 TALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLH 589
AL I L + PSF +N L+S MS T LR+P +N+DL L LIP PRLH
Sbjct: 205 EALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLH 264
Query: 590 FLMTGYTPLSADHEQ 634
F M G+ PL++ Q
Sbjct: 265 FFMVGFAPLTSRGSQ 279
Score = 81.0 bits (191), Expect = 9e-16
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = +1
Query: 13 TIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDIINREADGSDNLEG 189
++ + PY +++ P+N + GAGNNWA G Y +G +L + V D++ +EA+ D L+G
Sbjct: 75 SVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQG 132
Query: 190 FVLCHSIAGGTGSGXGLI 243
F +CHS+ GGTGSG G +
Sbjct: 133 FQVCHSLGGGTGSGMGTL 150
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 126 bits (303), Expect = 2e-29
Identities = 59/135 (43%), Positives = 88/135 (65%)
Frame = +2
Query: 230 GMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDN 409
GMG+ ++ + + +P +++ T+SVFP+ ++SD VV+PYN+ L++ +L E+AD MVLDN
Sbjct: 147 GMGTLLISKIREEYPDRMMLTFSVFPS-PKVSDTVVEPYNATLSVHQLVENADECMVLDN 205
Query: 410 TALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLH 589
AL I L + PSF +N L+S MS T +LR+P +N+DL L LIP PRLH
Sbjct: 206 EALYDICFRTLKLSTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLH 265
Query: 590 FLMTGYTPLSADHEQ 634
F M G+ PL++ Q
Sbjct: 266 FFMVGFAPLTSRGSQ 280
Score = 81.0 bits (191), Expect = 9e-16
Identities = 34/78 (43%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = +1
Query: 13 TIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDIINREADGSDNLEG 189
+I + PY +++ P+N + GAGNNWA G Y +G +L + V D++ +EA+ D L+G
Sbjct: 76 SIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQG 133
Query: 190 FVLCHSIAGGTGSGXGLI 243
F +CHS+ GGTGSG G +
Sbjct: 134 FQVCHSLGGGTGSGMGTL 151
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 126 bits (303), Expect = 2e-29
Identities = 59/135 (43%), Positives = 88/135 (65%)
Frame = +2
Query: 230 GMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDN 409
GMG+ ++ + + +P +++ T+SVFP+ ++SD VV+PYN+ L++ +L E+AD MVLDN
Sbjct: 147 GMGTLLISKIREEYPDRMMLTFSVFPS-PKVSDTVVEPYNATLSVHQLVENADECMVLDN 205
Query: 410 TALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLH 589
AL I L + PSF +N L+S MS T +LR+P +N+DL L LIP PRLH
Sbjct: 206 EALYDICFRTLKLSTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLH 265
Query: 590 FLMTGYTPLSADHEQ 634
F M G+ PL++ Q
Sbjct: 266 FFMVGFAPLTSRGSQ 280
Score = 79.4 bits (187), Expect = 3e-15
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = +1
Query: 13 TIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDIINREADGSDNLEG 189
+I + P+ +++ P+N + GAGNNWA G Y +G +L + V D++ +EA+ D L+G
Sbjct: 76 SIRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQG 133
Query: 190 FVLCHSIAGGTGSGXGLI 243
F +CHS+ GGTGSG G +
Sbjct: 134 FQVCHSLGGGTGSGMGTL 151
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 124 bits (300), Expect = 6e-29
Identities = 59/135 (43%), Positives = 87/135 (64%)
Frame = +2
Query: 230 GMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDN 409
GMG+ ++ + + +P +++ T+SVFP+ ++SD VV+PYN+ L++ +L E+AD MVLDN
Sbjct: 146 GMGTLLISKIREEYPDRMMLTFSVFPS-PKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 410 TALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLH 589
AL I L + PSF +N L+S MS T LR+P +N+DL L LIP PRLH
Sbjct: 205 EALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLH 264
Query: 590 FLMTGYTPLSADHEQ 634
F M G+ PL++ Q
Sbjct: 265 FFMVGFAPLTSRGSQ 279
Score = 79.4 bits (187), Expect = 3e-15
Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Frame = +1
Query: 13 TIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDIINREADGSDNLEG 189
++ + PY + + P+N + GAGNNWA G Y +G +L + V D++ +EA+ D L+G
Sbjct: 75 SLRSGPYGQTFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQG 132
Query: 190 FVLCHSIAGGTGSGXGLI 243
F +CHS+ GGTGSG G +
Sbjct: 133 FQVCHSLGGGTGSGMGTL 150
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 124 bits (300), Expect = 6e-29
Identities = 59/135 (43%), Positives = 87/135 (64%)
Frame = +2
Query: 230 GMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDN 409
GMG+ ++ + + +P +++ T+SVFP+ ++SD VV+PYN+ L++ +L E+AD MVLDN
Sbjct: 146 GMGTLLISKIREEYPDRMMLTFSVFPS-PKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 410 TALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLH 589
AL I L + PSF +N L+S MS T LR+P +N+DL L LIP PRLH
Sbjct: 205 EALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLH 264
Query: 590 FLMTGYTPLSADHEQ 634
F M G+ PL++ Q
Sbjct: 265 FFMVGFAPLTSRGSQ 279
Score = 79.4 bits (187), Expect = 3e-15
Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Frame = +1
Query: 13 TIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDIINREADGSDNLEG 189
++ + PY + + P+N + GAGNNWA G Y +G +L + V D++ +EA+ D L+G
Sbjct: 75 SLRSGPYGQTFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQG 132
Query: 190 FVLCHSIAGGTGSGXGLI 243
F +CHS+ GGTGSG G +
Sbjct: 133 FQVCHSLGGGTGSGMGTL 150
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 124 bits (300), Expect = 6e-29
Identities = 59/135 (43%), Positives = 87/135 (64%)
Frame = +2
Query: 230 GMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDN 409
GMG+ ++ + + +P +++ T+SVFP+ ++SD VV+PYN+ L++ +L E+AD MVLDN
Sbjct: 146 GMGTLLISKIREEYPDRMMLTFSVFPS-PKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 410 TALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLH 589
AL I L + PSF +N L+S MS T LR+P +N+DL L LIP PRLH
Sbjct: 205 EALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLH 264
Query: 590 FLMTGYTPLSADHEQ 634
F M G+ PL++ Q
Sbjct: 265 FFMVGFAPLTSRGSQ 279
Score = 81.0 bits (191), Expect = 9e-16
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = +1
Query: 13 TIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDIINREADGSDNLEG 189
++ + PY +++ P+N + GAGNNWA G Y +G +L + V D++ +EA+ D L+G
Sbjct: 75 SVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQG 132
Query: 190 FVLCHSIAGGTGSGXGLI 243
F +CHS+ GGTGSG G +
Sbjct: 133 FQVCHSLGGGTGSGMGTL 150
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 124 bits (300), Expect = 6e-29
Identities = 59/135 (43%), Positives = 87/135 (64%)
Frame = +2
Query: 230 GMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDN 409
GMG+ ++ + + +P +++ T+SVFP+ ++SD VV+PYN+ L++ +L E+AD MVLDN
Sbjct: 146 GMGTLLISKIREEYPDRMMLTFSVFPS-PKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 410 TALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLH 589
AL I L + PSF +N L+S MS T LR+P +N+DL L LIP PRLH
Sbjct: 205 EALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLH 264
Query: 590 FLMTGYTPLSADHEQ 634
F M G+ PL++ Q
Sbjct: 265 FFMVGFAPLTSRGSQ 279
Score = 80.2 bits (189), Expect = 2e-15
Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Frame = +1
Query: 13 TIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDIINREADGSDNLEG 189
++ PY +++ P+N + GAGNNWA G Y +G +L + V D++ +EA+ D L+G
Sbjct: 75 SVRTGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQG 132
Query: 190 FVLCHSIAGGTGSGXGLI 243
F +CHS+ GGTGSG G +
Sbjct: 133 FQVCHSLGGGTGSGMGTL 150
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 108 bits (259), Expect = 5e-24
Identities = 54/145 (37%), Positives = 89/145 (61%), Gaps = 4/145 (2%)
Frame = +2
Query: 230 GMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDN 409
G+GS +LE LS F KK ++++P+ ++S VV+PYNS+L+ L E D V++LDN
Sbjct: 148 GLGSLLLERLSVDFGKKSKLGFTIYPS-PQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDN 206
Query: 410 TALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLH 589
A+ I L I+ P+++ +N L+S +S+ T +LR+ +N D+ L+P PR+H
Sbjct: 207 EAIYDICRRSLDIERPTYSNLNRLISQTISSLTTSLRFDGAINVDITEFQTNLVPYPRIH 266
Query: 590 FLMTGYTPL----SADHEQTAAPKI 652
F+++ Y P+ A HEQ + P+I
Sbjct: 267 FMLSSYAPVISSAKAYHEQFSVPEI 291
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +1
Query: 7 IHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDIINREADGSDNL 183
I + Y +L++PE + K A NN+A G Y G ++ + + + + AD L
Sbjct: 75 IDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTVGREIVDTCLERLRKLADNCTGL 132
Query: 184 EGFVLCHSIAGGTGSGXG 237
+GF++ +++ GGTGSG G
Sbjct: 133 QGFLVFNAVGGGTGSGLG 150
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 107 bits (257), Expect = 9e-24
Identities = 53/145 (36%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Frame = +2
Query: 230 GMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDN 409
G+GS +LE LS + KK ++++P+ ++S VV+PYNS+L+ L E D ++LDN
Sbjct: 148 GLGSLLLERLSVDYGKKSKLGFTIYPS-PQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDN 206
Query: 410 TALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLH 589
A+ I L I+ P++ +N L+S I+S+ T +LR+ +N D+ L+P PR+H
Sbjct: 207 EAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIH 266
Query: 590 FLMTGYTPL----SADHEQTAAPKI 652
F+++ Y P+ A HEQ + P+I
Sbjct: 267 FMLSSYAPVISAAKAYHEQLSVPEI 291
Score = 51.6 bits (118), Expect = 6e-07
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 7 IHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDIINREADGSDNL 183
I + Y +L++PE + K A NN+A G Y G+++ + D + + AD L
Sbjct: 75 IDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTVGKEIVDLCLDRVRKLADNCTGL 132
Query: 184 EGFVLCHSIAGGTGSGXG 237
+GF++ +++ GGTGSG G
Sbjct: 133 QGFLVFNAVGGGTGSGLG 150
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 107 bits (257), Expect = 9e-24
Identities = 53/145 (36%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Frame = +2
Query: 230 GMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDN 409
G+GS +LE LS + KK ++++P+ ++S VV+PYNS+L+ L E D ++LDN
Sbjct: 148 GLGSLLLERLSVDYGKKSKLGFTIYPS-PQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDN 206
Query: 410 TALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLH 589
A+ I L I+ P++ +N L+S I+S+ T +LR+ +N D+ L+P PR+H
Sbjct: 207 EAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIH 266
Query: 590 FLMTGYTPL----SADHEQTAAPKI 652
F+++ Y P+ A HEQ + P+I
Sbjct: 267 FMLSSYAPVISAAKAYHEQLSVPEI 291
Score = 51.6 bits (118), Expect = 6e-07
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 7 IHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDIINREADGSDNL 183
I + Y +L++PE + K A NN+A G Y G+++ + D + + AD L
Sbjct: 75 IDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTVGKEIVDLCLDRVRKLADNCTGL 132
Query: 184 EGFVLCHSIAGGTGSGXG 237
+GF++ +++ GGTGSG G
Sbjct: 133 QGFLVFNAVGGGTGSGLG 150
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 105 bits (253), Expect = 3e-23
Identities = 55/145 (37%), Positives = 91/145 (62%), Gaps = 4/145 (2%)
Frame = +2
Query: 230 GMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDN 409
G+GS +LE LS + KK ++V+P+ ++S VV+PYNS+L+ L E D ++LDN
Sbjct: 148 GLGSLLLERLSVDYGKKSKLGFTVYPS-PQVSTSVVEPYNSVLSTHSLLEHTDVSILLDN 206
Query: 410 TALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLH 589
A+ I L+I+ P++ +N LVS ++S+ TA+LR+ +N D+ L+P PR+H
Sbjct: 207 EAIYDICRRSLNIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIH 266
Query: 590 FLMTGYTP-LSAD---HEQTAAPKI 652
F+++ Y P +SA+ HEQ + +I
Sbjct: 267 FMLSSYAPVISAEKAFHEQLSVAEI 291
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 7 IHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDIINREADGSDNL 183
I + Y +L++PE + K A NN+A G Y G+++ + D I + AD L
Sbjct: 75 IDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGL 132
Query: 184 EGFVLCHSIAGGTGSGXG 237
+GF++ +++ GGTGSG G
Sbjct: 133 QGFLVFNAVGGGTGSGLG 150
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 105 bits (253), Expect = 3e-23
Identities = 55/145 (37%), Positives = 91/145 (62%), Gaps = 4/145 (2%)
Frame = +2
Query: 230 GMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDN 409
G+GS +LE LS + KK ++V+P+ ++S VV+PYNS+L+ L E D ++LDN
Sbjct: 148 GLGSLLLERLSVDYGKKSKLGFTVYPS-PQVSTSVVEPYNSVLSTHSLLEHTDVSILLDN 206
Query: 410 TALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLH 589
A+ I L+I+ P++ +N LVS ++S+ TA+LR+ +N D+ L+P PR+H
Sbjct: 207 EAIYDICRRSLNIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIH 266
Query: 590 FLMTGYTP-LSAD---HEQTAAPKI 652
F+++ Y P +SA+ HEQ + +I
Sbjct: 267 FMLSSYAPVISAEKAFHEQLSVAEI 291
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 7 IHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDIINREADGSDNL 183
I + Y +L++PE + K A NN+A G Y G+++ + D I + AD L
Sbjct: 75 IDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGL 132
Query: 184 EGFVLCHSIAGGTGSGXG 237
+GF++ +++ GGTGSG G
Sbjct: 133 QGFLVFNAVGGGTGSGLG 150
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 105 bits (251), Expect = 5e-23
Identities = 55/145 (37%), Positives = 90/145 (62%), Gaps = 4/145 (2%)
Frame = +2
Query: 230 GMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDN 409
G+GS +LE LS + KK ++V+P+ ++S VV+PYNS+L+ L E D ++LDN
Sbjct: 148 GLGSLLLERLSVDYGKKSKLGFTVYPS-PQVSTSVVEPYNSVLSTHSLLEHTDVSILLDN 206
Query: 410 TALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLH 589
A+ I L I+ P++ +N LVS ++S+ TA+LR+ +N D+ L+P PR+H
Sbjct: 207 EAIYDICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIH 266
Query: 590 FLMTGYTP-LSAD---HEQTAAPKI 652
F+++ Y P +SA+ HEQ + +I
Sbjct: 267 FMLSSYAPVISAEKAFHEQLSVAEI 291
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 7 IHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDIINREADGSDNL 183
I + Y +L++PE + K A NN+A G Y G+++ + D I + AD L
Sbjct: 75 IDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGL 132
Query: 184 EGFVLCHSIAGGTGSGXG 237
+GF++ +++ GGTGSG G
Sbjct: 133 QGFLVFNAVGGGTGSGLG 150
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 105 bits (251), Expect = 5e-23
Identities = 55/145 (37%), Positives = 90/145 (62%), Gaps = 4/145 (2%)
Frame = +2
Query: 230 GMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDN 409
G+GS +LE LS + KK ++V+P+ ++S VV+PYNS+L+ L E D ++LDN
Sbjct: 148 GLGSLLLERLSVDYGKKSKLGFTVYPS-PQVSTSVVEPYNSVLSTHSLLEHTDVSILLDN 206
Query: 410 TALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLH 589
A+ I L I+ P++ +N LVS ++S+ TA+LR+ +N D+ L+P PR+H
Sbjct: 207 EAIYDICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIH 266
Query: 590 FLMTGYTP-LSAD---HEQTAAPKI 652
F+++ Y P +SA+ HEQ + +I
Sbjct: 267 FMLSSYAPVISAEKAFHEQLSVAEI 291
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 7 IHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDIINREADGSDNL 183
I + Y +L++PE + K A NN+A G Y G+++ + D I + AD L
Sbjct: 75 IDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGL 132
Query: 184 EGFVLCHSIAGGTGSGXG 237
+GF++ +++ GGTGSG G
Sbjct: 133 QGFLVFNAVGGGTGSGLG 150
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,181,985
Number of Sequences: 28952
Number of extensions: 354612
Number of successful extensions: 1012
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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