Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_C17
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0799 - 19805190-19805749,19806316-19806403 30 2.7
08_02_1319 + 26117353-26117784 29 4.7
07_03_0579 + 19649978-19650442 29 4.7
07_03_0568 - 19593265-19593729 29 4.7
09_04_0476 - 17922072-17922469,17922546-17923241,17923405-179235... 29 6.2
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144... 29 6.2
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699... 28 8.2
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075... 28 8.2
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.2
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +3
Query: 357 PVEKKIPYPVKVHVPQPYPVCQTCPLPS*RDC 452
PV K +P+PV P P P C CP PS C
Sbjct: 94 PVCKLVPFPVPYPAPPPPPAC--CP-PSTHQC 122
>08_02_1319 + 26117353-26117784
Length = 143
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 417 CQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQTRPRQGICARTL 566
C PL D +GTS L ++ + P TCP++ RP +RT+
Sbjct: 76 CTGKPLEMLLD-RGTSKPDKYLKAKSDSVRPRTCPAKSGRPPGASSSRTV 124
>07_03_0579 + 19649978-19650442
Length = 154
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 444 RDCQGTSSRTATLPSRKEGALPSTCPSRQTRPRQGICARTLPRLKRKFM 590
RD + R A + +G P+ P+ PR ++LPRLK + +
Sbjct: 91 RDDPFRAVRVAVKDVKLQGPRPAPTPANMAAPRPTTAGKSLPRLKMQML 139
>07_03_0568 - 19593265-19593729
Length = 154
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 444 RDCQGTSSRTATLPSRKEGALPSTCPSRQTRPRQGICARTLPRLKRKFM 590
RD + R A + +G P+ P+ PR ++LPRLK + +
Sbjct: 91 RDDPFRAVRVAVKDVKLQGPRPAPTPANMAAPRPTTAGKSLPRLKMQML 139
>09_04_0476 -
17922072-17922469,17922546-17923241,17923405-17923569,
17923670-17924105,17924314-17924739
Length = 706
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 669 ACSLPRIQRGTSTSKGHVDRPYPVHIPNQC 758
A +P +RG T G++D P+P I +QC
Sbjct: 21 AADVPAGRRGCQTRCGNLDIPFPFGIGDQC 50
>05_01_0201 -
1441063-1443836,1444658-1445758,1446367-1447179,
1447386-1447440
Length = 1580
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 649 RKGPVHVPAPYPVYKEVQVPVKVMWTDPTPCISQTSA 759
+KG H PAP P V P PTPC S +A
Sbjct: 237 QKGITHTPAPAPCVSPVAAP------SPTPCASPVAA 267
>06_01_0906 +
6990892-6991615,6992480-6992679,6992822-6993002,
6993855-6994046,6994492-6994724,6995537-6995638,
6995776-6995826,6996234-6996338,6997287-6997353,
6997946-6997962
Length = 623
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 317 SSRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSN 424
+S S P+RK PGRK P P S + P N
Sbjct: 7 ASTSSPKRKPGRRPGRKPKPPPAPSPAAAPAPAAEN 42
>04_04_0859 +
28805836-28805842,28806405-28806492,28807474-28807558,
28807638-28807763,28807819-28807968,28808497-28808541,
28808612-28808875,28809843-28809887,28810395-28810430,
28812048-28812816,28813063-28813925,28814024-28814182,
28814440-28814558,28815356-28815417,28816677-28816805,
28817395-28817460,28817757-28817890,28818025-28818162,
28818630-28818889,28818996-28819107,28819590-28819675,
28820655-28820735,28822841-28822928,28823222-28823260,
28823847-28823964,28824063-28824130,28824884-28824981,
28825238-28825397,28825691-28825816,28825876-28825945,
28826046-28826449
Length = 1664
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 387 KVHVPQPYPVCQTCPLPS*RDCQGTSSRTATL 482
K+ +P P C TC S RDC G T L
Sbjct: 78 KLGLPNGAPQCATCGSRSIRDCDGKKKLTGKL 109
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.2
Identities = 28/77 (36%), Positives = 35/77 (45%)
Frame = +2
Query: 320 SRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRR 499
SRS PRR A P GR +P P S RSP PR S S + R+P +RR
Sbjct: 226 SRS-PRRSASPPNGRNRSPTPNAS-RSPA-PRDSR---------SPMRADSRSPADHERR 273
Query: 500 CLTQYMSQSTDPSPSRY 550
++ + PSP Y
Sbjct: 274 DMST-AANGRSPSPRDY 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,646,124
Number of Sequences: 37544
Number of extensions: 380452
Number of successful extensions: 1423
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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