Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C17
         (851 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)          31   1.6  
SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)                  30   2.7  
SB_39937| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)                  29   4.8  
SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)                 29   6.3  
SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)                    29   6.3  
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_45382| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)                     28   8.4  
SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)               24   9.2  

>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
          Length = 1039

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 320 SRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQL 442
           S  +PRR    L   +E P PR+S RS +LP L+N+    L
Sbjct: 373 SAPMPRRSISDLA--RELPTPRQSVRSVSLPDLTNVETLAL 411



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 329 LPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQL 442
           +PRR    L   +E P PR+S RS +LP L+N+    L
Sbjct: 1   MPRRSISDLA--RELPTPRQSVRSVSLPDLTNVETLAL 36


>SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)
          Length = 809

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = +2

Query: 308 R*ESSRSLPRRKAHP-LPGRKE-NPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNP 481
           R  + +++ +R +HP +P ++  NP   +   S   P+++NMS+  +   S   +     
Sbjct: 484 RMNAQQNMSQRLSHPSIPEQQAYNPYGNQQVMSQAPPQVNNMSMQNMPAYSSSGYPNMRG 543

Query: 482 TQSKRRCLTQYMSQSTDPSPSRYMCQ 559
            Q +R+     MSQ   P+  +Y  Q
Sbjct: 544 NQFQRQLSMPVMSQGY-PNQEQYAQQ 568


>SB_39937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = -1

Query: 842 GXGRSTGTXTG*GXXFXPGMGRXSRRGKALVWDM-HGVGSVHMTFTGTCTSLYTG*GAGT 666
           G G   G   G G     GMG+   +G        HG G     +TG  T  +TG G G 
Sbjct: 134 GQGMGQGVGQGMGQGVGQGMGQGVGQGMGQGHGTGHGTGHGTGRWTGHGTGRWTGHGTGR 193

Query: 665 CTG 657
            TG
Sbjct: 194 WTG 196


>SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 420

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 381 PVKVHVP-QPYPVCQTCPLPS*RDCQ-GTSSRTATLPSRKEGALPSTCP 521
           P++ ++P  P+P+CQT PL    + +  T S     P    G+ P + P
Sbjct: 108 PIRDNLPLAPHPMCQTLPLQDNTESKLKTESEPTRSPQSDSGSTPPSSP 156


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/48 (39%), Positives = 20/48 (41%)
 Frame = +2

Query: 359 GRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRC 502
           G     LPR   RS +LP LS  S       SR Q T R P  S   C
Sbjct: 675 GTSNKQLPRPHRRSTSLPSLSPDSSRDSDYQSRAQSTVRAPHPSPSAC 722


>SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)
          Length = 798

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 329 LPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRL 451
           LP  K  P+P   E P+     R+PT+ R ++M LT  + L
Sbjct: 652 LPESKPAPIPVIPEAPVFDPKPRTPTVSRKTSMKLTAEEHL 692


>SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)
          Length = 221

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 414 RGRVGERALSRGRGFSFLPGRGCAFRRGR 328
           +GR+G R   RGRG +  PGRG    RGR
Sbjct: 89  QGRLGARG--RGRGMARGPGRGMVGARGR 115


>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
          Length = 932

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +3

Query: 381 PVKVHVPQPYPVCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQTRPR 542
           P+   +        T  +P  +D Q  +S TAT+P       P T  S  T PR
Sbjct: 715 PIATDIQASRKASSTATIPGSKDSQPATS-TATIPRATNTQAPKTASSANTIPR 767


>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1299

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 368 ENPLPRESARSPTLPRLSNMSLTQLK 445
           ++P+P ESARS   PR S+ S +Q K
Sbjct: 170 DHPVPTESARSARSPRKSSSSSSQAK 195


>SB_45382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +3

Query: 354 YPVEKKIPYPVKVHVPQPYPVCQTCPLPS*RDCQGTSSRT--ATLPSRKEGALPSTCP 521
           YPV     YPV +    P  + QTCP+   + C  T  +T   TL      AL  T P
Sbjct: 235 YPVALGQTYPVALGQTYPVVLGQTCPVTLGQTCPVTLGQTCPVTLGQTYPVALGQTYP 292


>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
          Length = 293

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +3

Query: 351 PY-PVEKKIPYPVKVHVPQPYPVCQTCPLP 437
           PY P+  ++PYP     P P+P     P P
Sbjct: 121 PYSPIPPQVPYPGAAGPPMPHPTASVYPPP 150


>SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 405 PYPVCQTCPLPS*RDCQGTSSRTATLPSR 491
           P P C +CPLP    CQ     +   PSR
Sbjct: 482 PPPGCASCPLPGCASCQPPGCASCPGPSR 510


>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 583

 Score = 24.2 bits (50), Expect(2) = 9.2
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +1

Query: 670 PAPYPVYKEVQVPVKVMWTDPTPCISQTSALPRREXRPIPGXK 798
           PA  P    +   +  M T+PTP   +    P  E R  PG +
Sbjct: 155 PALTPSQSSMSQEMDSMETEPTPPPKEMPPQPAEESRTPPGSR 197



 Score = 22.2 bits (45), Expect(2) = 9.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 637 STLPRKGPVHVPAPYPVY 690
           ++ P+  PV  P P PVY
Sbjct: 121 NSFPKGTPVTTPIPTPVY 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,661,585
Number of Sequences: 59808
Number of extensions: 407099
Number of successful extensions: 1626
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)