Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C17
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    23   2.7  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    22   8.2  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   8.2  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   8.2  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   8.2  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   8.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.2  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 528 QTRPRQGICARTLPRLKRKF 587
           + RPR    A  L RLKR+F
Sbjct: 20  EKRPRTAFSAEQLARLKREF 39


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 528 QTRPRQGICARTLPRLKRKF 587
           + RPR       L RLKR+F
Sbjct: 20  EKRPRTAFSGEQLARLKREF 39


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 658 PVHVPAPYPVY 690
           PV VP P PVY
Sbjct: 112 PVPVPVPVPVY 122


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 658 PVHVPAPYPVY 690
           PV VP P PVY
Sbjct: 112 PVPVPVPVPVY 122


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 658 PVHVPAPYPVY 690
           PV VP P PVY
Sbjct: 112 PVPVPVPVPVY 122


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 658 PVHVPAPYPVY 690
           PV VP P PVY
Sbjct: 345 PVPVPVPVPVY 355


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 374 PLPRESARSPTLPRLSNMSLTQLKRLS 454
           PLP      PT+P + +M+    +R+S
Sbjct: 431 PLPNMPGSMPTMPTMPSMAGPIRRRIS 457


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,452
Number of Sequences: 438
Number of extensions: 4746
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)