Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C16
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    30   0.47 
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    27   2.5  
SPAC4C5.01 |||haloacid dehalogenase-like hydrolase |Schizosaccha...    27   3.3  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    26   5.8  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    26   5.8  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -2

Query: 526 FEGSGCGFGTGSVMGLVQQIS---TLSWQSSSPNLTSSTPHPVTLALLTST-PSLF 371
           F  SG    T  ++  + Q+S   T SW SSS  LT +    VT A+ T+  P +F
Sbjct: 151 FGASGITSNTDPIVDEIDQMSARFTFSWDSSSMQLTLTEGMAVTTAVYTNAIPQIF 206


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 408 TGWGVLDVRFGEEDCQESVEICCTNPITEPVPKPQPDPSKVE 533
           TG G  D+   E+  +E V+   T    E VPK + + SK+E
Sbjct: 29  TGNGHSDLSIPEKKLKEDVDQVSTTKPIEAVPKMKTNASKIE 70


>SPAC4C5.01 |||haloacid dehalogenase-like hydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 616 PGVVALLDALNESYAGVGVLIHPQVVMTGAHIAY 717
           PG  +L++ L+     +GV  HP  ++  AH+ +
Sbjct: 94  PGAESLINNLSNHGIDIGVCTHPYAIIKTAHLKH 127


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 637 DALNESYAGVGVLIHPQVVMTGAHIAYKYAPGXWRAKA 750
           + L ++   V   IHPQV++ G  IA K A    RA +
Sbjct: 104 ELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASS 141


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +2

Query: 176 NSRSRP-GHDLRPCLASEHLRNAPHAGEARHGEPGRH 283
           NS S P G+   P L S +  +  H+G + HG    H
Sbjct: 113 NSSSNPQGYAWTPSLLSSNATSYLHSGSSPHGNTSNH 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,206,225
Number of Sequences: 5004
Number of extensions: 64378
Number of successful extensions: 295
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)