Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C16
         (839 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.094
SB_9601| Best HMM Match : Trypsin (HMM E-Value=0)                      34   0.12 
SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.38 
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)                       28   8.2  

>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 34.7 bits (76), Expect = 0.094
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 616 PGVVALLDALNESYAGV---GVLIHPQVVMTGAHIAYKYAPGXWRAKAG 753
           PG       L  +Y G    G L+HPQ V+T AH  Y+  P  ++ + G
Sbjct: 148 PGAWPWQAMLRSNYGGQFCGGTLVHPQWVITAAHCVYRRGPNDFKIRMG 196


>SB_9601| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 285

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 595 EAQFGEXPGVVALLDALNESYAGVGVLIHPQVVMTGAHIAYKYA---PGXWRAKAGXWD 762
           EA+ G+ P  +ALL    + Y G G L+H + V+TGAH    Y    P  W    G ++
Sbjct: 34  EAKAGQFPWQIALLFK-RQQYCG-GALVHERWVVTGAHCFNPYTSEDPRDWNVTLGEYN 90


>SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 768

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 411 GWGVLDVRFGEEDCQESVEICCTNPITEPVPKPQPDPSKVEG 536
           GW + DV+F   D  E   +    P+ EP P+P P P    G
Sbjct: 312 GWTLEDVQFELIDMNEEKPV--DEPVAEPKPEPPPQPDSAPG 351


>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 2/19 (10%)
 Frame = +3

Query: 477 TNPITEPVPKPQ--PDPSK 527
           ++P+T P+PKPQ  P PSK
Sbjct: 215 SHPLTRPIPKPQRPPQPSK 233


>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
          Length = 2065

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 657  RWSRSPDTSSSRHDWRSHRLQVRPGXLEGESR 752
            R+S++PD     HDW  H  Q     L G  R
Sbjct: 1095 RYSKTPDVGDGFHDWEHHLAQDGYMLLSGRCR 1126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,470,259
Number of Sequences: 59808
Number of extensions: 550046
Number of successful extensions: 2010
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2003
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)