Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_C16
(839 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13400.1 68416.m01685 multi-copper oxidase type I family prot... 32 0.55
At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger) fa... 31 0.72
At1g55560.1 68414.m06359 multi-copper oxidase type I family prot... 31 1.3
At1g55570.1 68414.m06360 multi-copper oxidase type I family prot... 30 1.7
At3g13390.1 68416.m01684 multi-copper oxidase type I family prot... 30 2.2
At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 29 5.1
At4g11440.1 68417.m01842 mitochondrial substrate carrier family ... 28 6.7
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 28 8.9
>At3g13400.1 68416.m01685 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 31.9 bits (69), Expect = 0.55
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -2
Query: 505 FGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLL 365
+GT + +G+ QQ+ ++ Q PNL S++ + V + + + FLL
Sbjct: 35 YGTAAPLGIPQQVILINGQFPGPNLNSTSNNNVVINVFNNLDEPFLL 81
>At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 145
Score = 31.5 bits (68), Expect = 0.72
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 336 SCKCVPYYLCNKNNEGVDVNNASVTGWGVLDVRFGEEDCQESVEICC 476
+C C+P KN D ++ G+ ++ V FG+++ +E EICC
Sbjct: 20 TCVCIPLGRLKKNGGDADAHDDD--GYNLVGVMFGDKEKEE--EICC 62
>At1g55560.1 68414.m06359 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 549
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -2
Query: 535 PSTFEGSGCGFGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLL 365
P F +GT S +G+ Q++ ++ Q PNL S++ + V + + FLL
Sbjct: 24 PYFFHTWNVTYGTASPLGVPQKVILINGQFPGPNLNSTSNNNVVINVFNHLDEPFLL 80
>At1g55570.1 68414.m06360 multi-copper oxidase type I family protein
nearly identical to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Multicopper
oxidase domain PF00394
Length = 555
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = -2
Query: 505 FGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLL 365
+GT S +G+ QQ+ ++ Q PN+ S++ + V + + + FL+
Sbjct: 37 YGTASPLGVPQQVILINGQFPGPNINSTSNNNVIVNVFNNLDEPFLI 83
>At3g13390.1 68416.m01684 multi-copper oxidase type I family protein
nearly identical to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Multicopper
oxidase domain PF00394
Length = 554
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -2
Query: 505 FGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLL 365
+GT S +G+ QQ+ ++ Q PN+ S++ + V + + + FLL
Sbjct: 36 YGTVSPLGVPQQVILINGQFPGPNVNSTSNNNVIINVFNNLDEPFLL 82
>At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 166
Score = 29.1 bits (62), Expect = 3.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 471 CCTNPITEPVPKPQPD 518
CC P+ + VPKP PD
Sbjct: 60 CCLRPVLQHVPKPDPD 75
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 28.7 bits (61), Expect = 5.1
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = -3
Query: 420 LPTPS-RWRY*RPPLHCSCYTNSRGRICKIPRSYP*TRCCSP*A*R*CLPGSPCRASPAW 244
LP+PS R PP+ + R +P P R SP R LP SP R +
Sbjct: 442 LPSPSIEQRLPSPPV-AQRLPSPPPRRAGLPSPPPAQRLPSPPPRRAGLP-SPMRIGGSH 499
Query: 243 GAFRRCSEARQGLRSCPGRDRLLPAPPAK 157
A S + L S PGR ++LP+PP +
Sbjct: 500 AANHLESPSPSSL-SPPGRKKVLPSPPVR 527
>At4g11440.1 68417.m01842 mitochondrial substrate carrier family
protein
Length = 550
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 270 NLEDIIVKPTESNSVFTDKNGESCKCV 350
N E I+ P S +NG+ C CV
Sbjct: 184 NFEGCILNPVSSKEELASRNGDGCDCV 210
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 475 QQISTLSWQSSSPNLTSSTPHPVTLALLTST 383
+ +++LSWQ+S P + + + +ALL ST
Sbjct: 310 EDVTSLSWQTSKPVIVNEKNYTSEMALLGST 340
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,529,748
Number of Sequences: 28952
Number of extensions: 373043
Number of successful extensions: 1208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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