Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_C13
(856 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.84
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 28 1.9
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.6
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 27 3.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.4
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 5.9
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 26 7.8
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.84
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +3
Query: 480 SRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPA--LPSREARPLPRXGSSAPTLPRGE 653
S P S+ + + L+R +P+ ++AP LPS +A P+P ++ P
Sbjct: 993 SAPLSKPVSTSPAAPLARV----PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTS 1048
Query: 654 TRAIPRSXLRCPYRXP 701
T +P+S P P
Sbjct: 1049 TPPVPKSSSGAPSAPP 1064
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = +3
Query: 555 LPRQGARAPALPSREARPLPRXGSSAP--TLPRGETRAIPRSXLRCPYRXPTPL*SXSVS 728
L + + +PA P P+P+ S AP LP + IP P PT S
Sbjct: 996 LSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKS 1055
Query: 729 RQGA 740
GA
Sbjct: 1056 SSGA 1059
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +1
Query: 304 PTSPRPSPSSKASLXPYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVP 453
P++P P S + P A PVP K P P+ A P V P
Sbjct: 992 PSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAP 1041
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 570 ARAPALPSREARPLPRXGSSAPTLPRGETRAIPRS 674
A + A+P EA+P P S+A P E+ +P +
Sbjct: 316 ATSDAVPPAEAKPEPVPASAAERAPTSESTTVPET 350
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.5 bits (58), Expect = 2.6
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 477 GSRPR--SRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRXGSSAPTL 641
GS PR S A+ ++ S ++ S + P Q + PALPSR LP S P++
Sbjct: 77 GSTPRTASPAVGNQDYSKPSYSQPS-YSQPSQPPKEPALPSRGTPSLPSRPGSRPSV 132
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 164 TTFVQXLLXGVQLCFLXXXXHWQPLLLPAGKLSRA 60
T ++ +L ++ L WQP+L+P GK+ RA
Sbjct: 212 TRAMERVLKLPEMAHLLKDPIWQPILMPNGKVLRA 246
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 400 YPVKVAVPQPYEVVKHVPYHVKEYVKV 480
Y +K+ VP P+ ++H P HV Y ++
Sbjct: 2322 YSLKLDVPLPFFALEHRPTHVISYTEL 2348
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.4
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 486 PRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRXGSSAPT 638
PRS R+ LS +R A+ A PA+P R A LP G+++ T
Sbjct: 366 PRSAPSTGRQPPPLSSSR----AVSNPPAPPPAIPGRSAPALPPLGNASRT 412
Score = 26.2 bits (55), Expect = 5.9
Identities = 26/97 (26%), Positives = 40/97 (41%)
Frame = +3
Query: 378 PS*EARALSRQGSRAPTLRGRQTRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QAL 557
P +RA+S + P + GR A+ G SR + +P+ S ++ +L
Sbjct: 378 PLSSSRAVSNPPAPPPAIPGRSAPALPPLGN--ASRTSTPPVPTPP----SLPPSAPPSL 431
Query: 558 PRQGARAPALPSREARPLPRXGSSAPTLPRGETRAIP 668
P + + + A PLP AP LP G A P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 301 IPTSPRPSPSSKASLXPYA-VDRPVPYPVEKHVPYPVKVAVPQP 429
+PT P PS+ SL P A P+ P +P +A P P
Sbjct: 417 VPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 370 VPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVK 477
+ YPV + P V V Q YEV V YH K+ +K
Sbjct: 304 ITYPVAETAPSLVVKVVNQDYEV--KVFYHYKDNIK 337
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 313 PRPSPSSKASLXPYAVDRPVPYPVEKHVPYPVKV 414
P PS S+ +S+ P A V V + PYP ++
Sbjct: 216 PPPSDSANSSVTPIAAPLVVNGKVSGNPPYPAEI 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,483
Number of Sequences: 5004
Number of extensions: 41245
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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